Halanaeroarchaeum sulfurireducens HSR2: HLASF_1437
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Entry
HLASF_1437 CDS
T03927
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsu
Halanaeroarchaeum sulfurireducens HSR2
Brite
KEGG Orthology (KO) [BR:
hsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsu03016
]
HLASF_1437
Enzymes [BR:
hsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HLASF_1437
Transfer RNA biogenesis [BR:
hsu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HLASF_1437
Prokaryotic type
tRNA splicing ligases
HLASF_1437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
AKH97920
UniProt:
A0A0F7PCL5
LinkDB
All DBs
Position
1391195..1394080
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AA seq
961 aa
AA seq
DB search
MTTFDADGIELTRIEDNVWEIEAEEEMNVPVRVMASEALLEEIQQDKTLQQIKNVTHLPG
IQSPAVCMPDGHQGYGFPVGGVAATDAENGVISPGGVGYDINCLAGDTDVLLSFGRRRSI
QTLDDGVASESARVISDRPTDADVQLFTESEKPVLELVTEAGTTIEASRDHPFRTPSGMT
EADELERGSIVHVHPFDGLPDEEPPSKTILTKDDFSDEDPQLIAALERRDLLPLSTDDEA
FHRLLKLVGFHTGDGSKSGNQTWFYGDPEDLEEIATDIEAIGFTPSKIYERERTHTIDGN
SFERTEYSVRSTANSFAALLERLGAPTGRKVASDFTVPDYVEDLTDWQKALYLSAFFGAE
MSAPDTVAAMNFYAPSVSHNRLESVEEAGAQFLRELMDLLEDVGIETNELERVERTDRTQ
EVSVRFRFGVSSEARNLIRFFTTVGYRYNAEKQRRGLQAAAYLEKKERAIERRTSIARKA
VTMSDGGTPVSEIASSFDVVNRRFIERSIYDQRVGRPRPSADFPDFEEFVETHPMGSDMT
IPVRIEDIRPLGEKSVYDIGVAHEAHNFVANGFVVSNCGVRMVKTNLTYEDVQGHEEELV
NALFDAVPSGLGGGGVVQGTTATIDEILDRGMQWALDNGYAIEDDLEHCEDNGFREEADP
STVSDEAKNRGRKQIGSLGSGNHFLEVQRVTDIYREDVAEAFGLREDQIVVLIHCGSRGL
GHQVCTDYLRRIEQDHSDLLESLPDKELAAAPAGSPLAEDYYGAMNAAINFAWVNRQLVM
HQTRQVFADVFETDWRDLDMYLLYDVAHNIAKKETHTVAGEKKELFVHRKGATRAFPAGH
PEVPEAYRDVGQPVIIPGSMGSGSYVLRGGENSLDRTFGSTAHGAGRLMSRTQAKQEFWG
EDVRDELRDENQIYVKAQSGATIAEEAPGVYKDVDEVVRVSEELGIGDSVARTYPVVNIK
G
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgactacatttgatgcggacggcatcgagttaacccggatcgaggacaacgtctgggaa
atcgaggccgaggaagaaatgaatgtgcccgtccgcgtgatggcgagcgaggcacttctc
gaggagatccagcaggacaagaccctccagcagatcaaaaacgtcacccatctccccgga
atccagtccccggcggtctgcatgccggacggccaccaggggtacgggttcccggtcgga
ggggtggctgccacagatgccgaaaacggcgtcatcagccctggaggcgtcgggtatgac
atcaattgcctagcgggagatacggacgtcctcctctcgttcgggcgacggcgctccatc
caaacgctcgacgacggagtcgcaagcgagtccgcgcgtgttatctccgaccggcccaca
gacgcggacgttcagctgttcacggagtcggaaaagccggttctggaactcgtaaccgag
gctggaaccacgatcgaggccagtcgggatcacccgttccgaaccccgtctgggatgacg
gaggccgacgaactggaacgaggctcgatcgtccacgttcaccccttcgacggactgccc
gacgaggagccaccgtccaagacgatactcaccaaagacgacttctcggacgaggatccc
cagctgatcgcggcgctcgagcgacgagacctgctcccgctctccacggacgatgaggcg
ttccatcggttgttgaaactcgtgggattccacacgggcgacggttcgaagagcggcaac
cagacgtggttctacggcgaccccgaggacctcgaggagatcgctacagacatcgaggcg
atcggtttcacgccgtcgaagatctacgaacgcgagcggacacacaccatcgatgggaac
tccttcgagcggaccgagtacagcgttcgatcgacggcgaactccttcgcggcgcttctc
gaacggctgggggcgccgacggggcggaaagtcgcctcggattttaccgttccagactac
gtcgaggacctcacggactggcagaaggccctctatctctcggcgttcttcggcgcggag
atgagtgcacccgacaccgtcgcggcaatgaacttctatgccccatcggtctcgcacaac
cggctagaatccgtcgaggaggcaggtgcgcagttcctccgagagttgatggacctcctt
gaggacgttgggatcgaaacgaacgaactcgagcgggtcgaacggacagatcgaacgcag
gaggtgagtgtccgattccgcttcggggtctccagcgaggcgaggaatttgattcggttc
ttcacgacggtcgggtaccggtacaacgccgagaagcagcgtcgtggcctccaggcagcg
gcgtatctcgagaaaaaagagcgagccatcgagcgacggacgtcgatcgcccgcaaggcc
gtcacgatgtcggacggtgggacgcccgtgagcgagattgcgtcctcgttcgacgtggtg
aatcgacgcttcatcgaacggagcatctacgatcaacgtgtgggacggccgaggccctcg
gcggactttcccgacttcgaggagttcgtcgagacacaccccatgggttcggacatgacg
attccggttcgtatcgaggatattcggccactcggagagaaatcggtgtacgatatcggc
gtggcacacgaggcacacaacttcgtcgcgaacgggttcgtcgtctcgaactgcggcgtc
cgaatggtgaaaacaaacctcacctacgaggacgtacagggccacgaggaggaactcgtg
aacgccctcttcgacgcagttccgtcggggctgggcgggggtggtgtcgtccaggggacg
accgcgaccatcgacgagatcctcgaccggggcatgcaatgggcgctcgacaacgggtac
gccatcgaggacgacctcgaacactgtgaggacaacggcttccgcgaggaggccgacccc
tcgacggtctcagacgaggcgaaaaaccgggggcgcaaacagatcggaagcctgggaagt
ggaaaccacttccttgaggtgcagcgggtcacggacatctatcgcgaggacgtcgccgag
gcgttcggcctcagggaagaccagatcgtcgtcctgattcactgtggttcacggggactc
ggtcaccaggtctgcaccgattacctccgccgtatcgaacaggaccactccgatctgctc
gagtcacttcccgacaaggaactggccgctgcaccggcggggagcccgctggccgaggac
tactacggcgcgatgaacgcggccatcaacttcgcgtgggtgaaccgacagctcgtcatg
catcagacccgtcaggtcttcgccgacgtcttcgagacggactggcgggacctggacatg
tatctgctctacgacgtggctcacaacatcgcgaaaaaggagacgcacacggtggcgggc
gaaaaaaaggaactcttcgtccatcgcaagggcgcgacccgggcgttcccggccggacac
ccggaggtgcccgaggcataccgagacgtcggacagccagtcatcattcccggaagcatg
ggctctggaagctacgttctgcgcggcggggagaactcgctggaccgaacgttcggatcg
accgcgcatggggccgggcggctgatgagccggacgcaggccaaacaggagttctggggc
gaagacgttcgggacgaactccgcgacgagaaccagatctacgtcaaagcacagagcggg
gccaccatcgccgaggaggcccccggcgtgtacaaggacgtcgacgaggtcgtccgggtc
tccgaagaactgggcatcggtgactcggtcgcccgtacctatccggtcgtgaacatcaaa
gggtga
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