Halomonas sulfidivorans: HNO53_08005
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Entry
HNO53_08005 CDS
T08036
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hsv
Halomonas sulfidivorans
Brite
KEGG Orthology (KO) [BR:
hsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsv03019
]
HNO53_08005 (hrpA)
Enzymes [BR:
hsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HNO53_08005 (hrpA)
Messenger RNA biogenesis [BR:
hsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HNO53_08005 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
AAA_25
T2SSE
NACHT
SRP54
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QTP58648
LinkDB
All DBs
Position
1708749..1712777
Genome browser
AA seq
1342 aa
AA seq
DB search
MSTVTSTGYTDDKTELQRLDQALGEVMLRDRDALVRRLNGLTRRLREGKPVDRGLAEVAR
SVERSAALAARRAAQPVTLNYPSELPVAERRDEILAALRDHQVVVVAGETGSGKTTQLPK
LCLELGLGRRGLIGHTQPRRLAARSVAARLAEELEVPLGEQVGYQVRFTDQTGDDTLIKL
MTDGILLAETRHDPDLRRYEAIVIDEAHERSLNIDFLLGYLKRLLPRRPELKVIITSATI
DVTRFAEHFALPGADGEPQPAPVVEVSGRTYPVEVRYRPLVREADDEADRTLQEGILHAV
EEIEQVERDERWFHGPRDILVFLPGEREIRETADTLRRADLKGTEILPLYARLSNAEQNR
VFAAHAGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPVEPVSQASAD
QRKGRCGRVAEGVCIRLYDEEDFLSRPEFTDPEIRRTNLASVILSMLSLKLGDIEQFPFV
DPPDSRFIKDGFRLLFELGAVDGGNRLTPTGRKLARLPIDPRLARMVLAGAEQGGLRDVL
VVVSALAVQDPRDRPAEKRQAADQAHRRWHDPDSDFVALLNLWQGFEAAREELSGNQLRR
WCKEHYLNYLRLREWHDTFRQLRQLLRDMEIEVPPPTPLPEPAQDGDAHEQARQQVRRQS
AVQLHKALLPGLLSHLGLLTENREYLGARNRKFVIHPGSGLAKKSPKWVMAFELVETTRL
FARTVAKIEPQWIEPVAEHLVKHSYSDPHWEMKRAQVVAKEQVTLFGLPIVAGRSVHYGP
VAPREARELFIRRALVEGEFRTKGEFFDYNRALVEEVEDLEDRARKRDILVDEETLFAFY
DEKIPDDIVNGKGFEAWRRKAEAQDPHVLKFDRAALLAREAAEVTQAQYPDELVLGGVRY
PLEYRFEPGAADDGVTLTVPAAMLPQLPSARLEWLVPGLLREKCIALLKSLPKAIRRQVV
PIPDWVDAALETLTPDDVPLTEALGEFLRRRTGIRLHPDDWRSDQLEPHLIMNVRVVDHQ
GRLLGQGRDVRELERRFEVAAGEGARALAAEVSDAPDVTGLPESPLPESRVTTQAGIRVE
AYPALVTEGEAFRIELFDHPGKAEQAHRRGVVRLAMTRLPDQVRCIQRLKGLEACALLFT
KVGSKRELFDDVVEAVFARGMAQSPLPRSAAELDARLEATQAELVPTAEALVATLKRTLE
GHLAVTKALKGSLNLALALVYSDLKTQMQRLVHPGFVSEAGEWLEEYPRYMEAALIRLEK
APRERMRDQMHMQEVQDFEARLAARRESLRRGGHEDPELVEFGWWIEELRVSLFAQQLGT
RMPVSVKRLERRWAELVGHGQG
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccgttacctccactggctataccgatgacaagaccgagctgcagcgcctggac
caggcattgggcgaggtcatgttgcgtgaccgtgacgccctcgtgcgcaggttgaacggc
ttgacgcgtcgcttgcgcgagggcaagccggtggatcgaggcctggccgaggtggcccgc
agcgtcgagcgttctgcggcgctggcggctcggcgcgcggcccagccggtaacgctgaat
tatccttccgagctgccggtggccgaacgccgcgacgagattctcgccgccctgcgtgat
catcaggtggtggtggtggccggggaaaccggctcgggcaagaccacccaattgcccaag
ctgtgcctggagctgggcctggggcgtcgcggcctgattggccacacccagccgcggcgg
ctggcggcgcgctcggtggcggcgcgcctggccgaggagctcgaggtgccgttgggcgag
caggtgggctaccaggtacgctttaccgatcagaccggcgacgacaccctgatcaagctg
atgactgacggtatcctgctggccgagacccgccacgatcccgaccttcgccgctacgaa
gcgatcgtcatcgacgaagcgcatgagcgcagtctcaacatcgattttttgctgggctac
ctcaagcgattgctgccgcggcgacccgagctcaaggtgatcatcacgtcggcgaccatc
gacgtgacgcgcttcgccgagcactttgccctgcccggggccgatggcgaaccgcagccc
gccccggtggtggaagtctcgggacgtacctatccggtggaagtgcgctatcggccgctg
gtgcgcgaggccgacgacgaggccgaccgcaccctgcaggagggcattctccacgcggtg
gaggagatcgagcaggtcgagcgcgacgagcgctggttccatgggcctcgcgacatcctg
gtattcctgcccggcgaacgcgagatccgtgaaaccgccgataccctgcgccgcgccgac
ctcaaaggcaccgagatcctgccgctctatgcgcggctctccaatgccgagcagaatcgc
gtattcgctgctcatgccgggcggcgcatcgtgctggcgaccaacgtcgccgaaacctcg
ctcaccgttcccggcatccgctacgtaatcgacccgggactggtgcgtatcagccgctac
agctaccgcgccaagatccagcgcctgccggtggagccggtcagccaggccagtgccgac
cagcgcaaggggcgctgcgggcgcgtggccgagggcgtatgcatccgcctctatgacgag
gaggatttcctctcccgccccgaattcaccgaccccgagatccggcgtaccaacctggcg
tcggtgatcctgtcgatgctctccctcaagctcggcgacatcgagcagtttcccttcgtc
gacccgcccgattcgcgcttcatcaaggatggctttcgcttgctgttcgagctgggggcg
gtggatggaggcaatcgcctgacgccgacggggcgcaagctcgcccggctgcccatcgat
ccacgcctggcgcgcatggtgttggcaggcgccgaacagggtgggctgcgcgacgtgctg
gtcgtggtctcggccctggcggtacaggacccgcgcgatcgtccggcggagaagcgtcag
gccgccgatcaggcccaccggcgctggcatgatccggactccgatttcgtcgcgctgctc
aacctgtggcagggcttcgaggcggcgcgtgaggagctttccggcaatcaactgcggcgc
tggtgcaaggagcactacctcaattacctgcgtctgcgcgaatggcacgataccttccgc
cagttgcgacagttgctgcgcgacatggagatcgaggtgccgcctcccacaccgctgccc
gagcctgcgcaagacggggacgcgcatgaacaggctcgtcagcaggtgcgccgccagagc
gccgtgcagttgcacaaggcgttgcttccgggcctgctctcccatctcggcttgctcacc
gagaatcgcgaatacctcggcgcgcgcaaccgcaagttcgtcattcaccccggctcgggc
ctggccaagaagtcacccaagtgggtgatggccttcgaactggtggagaccacccgactg
ttcgcgcgtacggtagcgaagatcgagccacagtggatcgagcccgtggccgagcatctg
gtcaagcacagctacagcgatccccattgggagatgaagcgggcccaggtggtagccaag
gagcaggtgaccctgttcggcctgcccatcgtggccgggcgcagcgtacactacgggccg
gtcgcgccgcgcgaggcacgagagctgttcattcgccgcgccctggtggagggcgaattt
cgcaccaagggtgagttcttcgactacaatcgcgctctggtggaagaggtcgaggatctc
gaggaccgggcgcgcaagcgcgacatcctggtcgacgaggaaaccctctttgccttctat
gacgagaagattcccgatgacatcgtcaacggcaagggcttcgaggcttggcgcagaaaa
gccgaggcccaggatccgcacgttctgaagttcgatcgggctgccctgctggctcgggag
gccgcggaggtcacccaggcgcaatatccggatgagctggtgctcggcggggtgcgctat
ccgctcgagtatcgcttcgagcccggcgcggcggacgatggcgtgacgctgacggtgccg
gcggccatgctgccccagctgccgagtgcacgcctcgagtggctggtaccggggctgctg
cgggaaaagtgcattgccttgctcaagtcattgccgaaggcgatccgacgccaggtggtg
ccgattcccgactgggtggatgccgcactggagacgctgacgccagacgacgtaccgctt
accgaggcactgggcgaattcctgcggcggcgcaccggaatacggctgcatcccgacgac
tggcgtagcgaccagctcgaaccgcatctgatcatgaacgtcagggtggtcgatcatcaa
ggccggctgctggggcaggggcgcgacgtacgcgaactcgagcgccgcttcgaagtggcg
gcgggcgagggcgcgcgggcgctggccgccgaggtcagcgacgcgcccgacgttaccggt
ttgcccgaatcgccgctgccagagtcgcgggtgaccacccaagcgggcatccgggtcgag
gcctacccggcgctggtgacggaaggcgaggcctttcggatcgaactgttcgatcatccc
ggcaaggccgaacaggcacatcgccgcggtgtggtgcggctggccatgacacgtctgccg
gaccaggtgcgctgcatccagcgcctcaaggggctcgaggcgtgtgctctgctgtttacc
aaggtaggcagcaagcgcgaactgttcgacgacgtggtcgaggcggtcttcgcccgcggc
atggcccagtcgccgctgccgcgctcggccgctgagctcgacgctcggctcgaagcgacc
caggccgagctggtacccacagccgaggcgctggtggccacgctcaaacgcacactcgaa
ggccatctggccgttaccaaggcgctcaagggtagcctcaacctggcgctggccctggta
tacagtgatctcaagacccagatgcaacggctggtgcatcccggtttcgtgagcgaggcg
ggcgagtggctcgaggagtacccgcgctacatggaagctgcgctgatccggctggagaag
gcgccccgcgaacgcatgcgcgaccagatgcacatgcaggaggtccaggacttcgaggcg
cgcctggccgcacgtcgcgagagcctgcgtcgtggcggccacgaggaccccgagctggtg
gagttcggctggtggatcgaggagctgcgagtgtcgctgttcgcccagcagctcggcacc
cgcatgccggtgtcggtcaagcgtctcgagcggcgttgggcggagctggtggggcacggt
caaggctga
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integrated database retrieval system
