Billgrantia antri: HNO53_18685
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Entry
HNO53_18685 CDS
T08036
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hsv
Billgrantia antri
Pathway
hsv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HNO53_18685 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsv03021
]
HNO53_18685 (rpoC)
03400 DNA repair and recombination proteins [BR:
hsv03400
]
HNO53_18685 (rpoC)
Enzymes [BR:
hsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HNO53_18685 (rpoC)
Transcription machinery [BR:
hsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HNO53_18685 (rpoC)
DNA repair and recombination proteins [BR:
hsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HNO53_18685 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BSH_YknX
RnfC_N
BSH_RND
DUF3150
DUF8628
Motif
Other DBs
NCBI-ProteinID:
QTP60566
LinkDB
All DBs
Position
complement(4019291..4023511)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAIQALLKDIDLSEEVDRLREEIPQTNSETKIKKLSKRLKLLEAFLNSGNDPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQANGQASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGDPIIVPSQDVVLGLYYMTREKINAKGEGMVFSGLNEVERAFGTQ
SVSLHARVKVRLTEVLIDEETGERSTARTLYDTTVGRAMLFRILPDGVPFELVDQPMKKK
AISKLLNEVYRRAGLKPTVIFADQLMYTGFRMATWSGASIGVNDFVIPEAKTEIVEAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMAGISKETVVDRKGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITEPDCGTEQGLTLHPVIEGGDIIVSLAQRV
LGRVVAQDVIDPSTDEVLIEKGTLLDEVWCERLDTMGVDEIVVRSAITCESTHGVCSSCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGKVR
LHNMKFVERNDGKLVVVSRSSALAVADEHGREREYYKLPYGAELSIKDGDAVEAGQMVAK
WDPHTHPIIAELEGKVQYVDMVDGVTIHRSVDEMTGLSSIEVIESAARPQAGRDSRPMIL
LTDESGEPVSVAGSNTPVQYLLPGKAIVSVDNGAQIGIGEIVARIPVEASGNKDITGGLP
RVADLFEARKPKEPAILAEVSGTISFGKETKGKRRLTITPDDGSDPFEMLIPKWRQIAVF
EGETVEKGEVISDGPSNPHDILRLLGVAELAKYITAEIQEVYRLQGVGINDKHIEVIVRQ
MLRKVEITDSGDSEFIPGDQVELVKVLEENARMEQAEKFPAKYQRVLLGITKASLATESF
ISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAHHQERRRKREDTERL
LHPSAFDVEQELGAQLTALDSDDDEL
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcagtcacagtccgaagagttcgacgcgatc
aagatctcgctcgcgtctccggacatgattcgctcctggtcctacggcgaggtcaagaag
cccgagaccatcaactaccgcaccttcaagccggagcgggacgggctgttctgcgccaag
atctttggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcatcatctgcgagaagtgcggcgtcgaggtgaccaaggcggcggtgcgccgggag
cgcatggggcacatcgagttggcctcgccggtagcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcatgttcctcgacatgaccctgcgtgatatcgagcgggtgctctac
ttcgagagcttcgtggtcatcgacccgggcatgaccacgctcgagcgcggccagctgctc
aacgacgagcagtacttcgaggccctcgaggagttcggtgacgattttgacgcccgcatg
ggtgccgaggcgatccaggcgctgctcaaggacatcgacctctccgaggaggtcgaccgc
ctgcgcgaggagatcccacagaccaactccgagaccaagatcaagaagctctctaagcgg
ctcaagctgctggaggccttcctcaactccggtaacgatccggcgtggatggtgatggag
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggtcgtttc
gccacctccgacctcaacgacctgtaccgccgggtgatcaaccgcaacaaccgcctcaag
cggctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagcggtcgatgcgctgctcgacaacggtcgtcgcggtcgcgccatcaccggctccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcaggggcgtttccgccag
aacctgctgggcaagcgcgtcgactactccggccgttcggtcattaccgtcggtccgacc
ctgcgcctgcaccagtgcggtctgcccaagaagatggcgctcgagctgttcaagccgttc
atctactccaagctgcaggccaacggccaggcctccaccatcaaggcggccaagaagatg
gtcgagcgcgagctgcccgaggtgtgggacattctcgccgacgtcattcgcgagcacccg
gtgctgctgaaccgcgcgccgaccctgcaccgcctgggtatccaggctttcgagccgctg
ctgatcgaaggcaaggcaatccagctgcacccgctggtgtgtgccgcctacaacgccgac
ttcgacggcgaccagatggcagtgcacgtaccgctgacgctggaagcccagctcgaggcg
cgtgcgctgatgatggccaccaacaacgtgctgtccccggccaacggtgacccgatcatc
gtgccgtcccaggacgtggtactgggcctgtactacatgacccgcgagaagatcaacgcc
aagggcgagggcatggtgttctccggcctcaacgaggtcgagcgcgccttcggtacccag
agcgtatcgctgcatgcgcgggtcaaggtgcgcctgaccgaggtgctgatcgacgaggag
actggcgagcgcagcaccgcgcgtaccctctacgacaccaccgtgggtcgcgccatgctg
ttccgcatcctgcccgacggcgtgccgttcgagctggtcgatcagccgatgaagaagaag
gcgatttcgaagctcctcaacgaggtgtatcgccgtgccggtctcaagccgacggtcatc
tttgccgaccagctgatgtataccggcttccgcatggcgacctggtcaggcgcctccatc
ggcgtcaacgacttcgtcattcccgaagccaagacggaaatcgtcgaggcggccgaggcc
gaggtcaaggagatcgaggatcagttctcctccggtctcgtgaccgccggcgagaagtac
aacaaggtcatcgacatctggtccaaggccaacgacaaggtggccaaggcgatgatggcg
ggcatctccaaggaaaccgtcgtcgatcgcaagggcaacgaggtcgagcaggattcgttc
aacagcgtattcatcatggccgactccggggcgcgtggtagtgctgcccagatccgccag
ctcgcgggcatgcgcggcctgatggccaagcccgacggctcgatcatcgagacgccgatc
gtggccaacttccgcgagggcctgaacgtactgcagtacttcatctcgacccacggtgcg
cggaagggtctggcggacacggcgctcaagaccgccaactccggttacctgacccgccgt
ctggtcgatgtcgcccaggacatggtgatcaccgagcccgactgcggcaccgagcagggg
ctgaccctgcatccggtcatcgaggggggcgacatcatcgtctcgctggcgcagcgcgtg
ctcggccgcgtagtggcccaggacgtcatcgaccccagcaccgatgaggtgctgatcgag
aagggaaccttgctcgacgaggtctggtgcgagcgtctcgacaccatgggtgtcgatgag
atcgtggtgcgcagcgcgatcacctgcgaatcgacccacggcgtctgctcctcgtgctac
ggtcgcgacctggcgcgtggtcatcaggtcaacatcggcgaggcggtgggggtcattgcc
gcccagtcgatcggtgagccgggtacccagctgaccatgcggaccttccacatcggcggc
gcggcatcgcgtgcctcggcggtggacagcgtgcaggtgaagcacggcggcaaggtgcgc
ctgcacaacatgaagttcgtcgagcgcaacgacggcaagctggtggtagtgtcccgctcc
agcgccctggcggtggccgacgagcatggccgcgagcgcgagtactacaagctaccctac
ggcgccgagctgtcgatcaaggacggcgatgcagtcgaggccggtcagatggtggccaag
tgggatccgcacacccacccgatcatcgccgagctggagggtaaggtgcagtacgtcgac
atggtcgacggggtcaccatccaccgcagcgtggacgagatgaccggcctctcctcgatc
gaggtgatcgagtcggcggcacgcccgcaggctggtcgcgacagccgaccgatgatcctg
ctcaccgacgagagcggcgagccggtcagcgtggcgggttccaacaccccggtgcagtac
ctgctgccgggcaaggcaatcgtctcggtcgacaatggcgctcagatcggcatcggcgag
atcgttgcgcgtatcccggtggaggcgtccggcaacaaggacatcaccggtggtctgccg
cgggtggccgacctgttcgaggcgcgcaagccgaaggagccggccatcctcgccgaagtc
agcggtacgatcagcttcggcaaggagaccaagggcaagcgccgcctgacgatcacgccc
gacgacggcagcgatccgttcgagatgctgatcccgaagtggcgtcagatcgcggtcttc
gaaggcgagaccgtggagaaaggcgaggtgatctccgacggtccgagcaacccgcacgac
atcctgcggctgctgggcgtggcggagctggccaagtacatcaccgccgagatccaggag
gtctatcgcctgcagggcgtgggcatcaacgacaagcacatcgaggtgatcgtgcgtcag
atgctgcgcaaggtcgagatcaccgactccggcgactccgagttcattccgggggaccag
gtcgagttggtcaaggtgctcgaggaaaatgcgcggatggaacaggccgagaagttcccg
gccaaataccagcgcgtgctgctgggtatcaccaaggccagcctggccaccgaatcgttc
atttccgcggcctccttccaagagaccacgcgggtgctgaccgaggcggcggttaccggc
aagcgcgactacctgcgtggcctgaaggagaacgtggtggtcggtcgcctgatcccggcg
ggaacggggctggcgcatcaccaggagcgtcgccgcaagcgggaagataccgagcgtctg
cttcacccgtcggccttcgacgtcgagcaggagctgggtgcccagctcaccgccctcgat
tcggacgacgacgagctgtag
DBGET
integrated database retrieval system
