Hymenobacter swuensis: Hsw_0129
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Entry
Hsw_0129 CDS
T03055
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
hsw
Hymenobacter swuensis
Pathway
hsw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hsw_0129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsw03400
]
Hsw_0129
DNA repair and recombination proteins [BR:
hsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hsw_0129
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hsw_0129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
DnaJ_CXXCXGXG
AAA_16
RsgA_GTPase
AAA_25
AAA_21
CA109-like
Viral_helicase1
Parb-CE
Motif
Other DBs
NCBI-ProteinID:
AHJ95724
UniProt:
W8ERF4
LinkDB
All DBs
Position
137579..140716
Genome browser
AA seq
1045 aa
AA seq
DB search
MAKKSTAASVSSPAAPKPAAAPNPTRSAKAAKPTATTVEPAPKPTKSPKPVKAPKSAAAA
VADGTNHHSTAAVQAVPRQEQVSEAVLENQARIQGQLLGPADLEAPYIEVYGAREHNLKN
VSVKIPRGRLVVFTGISGSGKSSLAFDTIYAEGQRRYMETFSAYARSFMGGLERPDVDKI
EGLSPVISIEQKTTSRNPRSTVGTITEIYDFLRLLYARTAEAFSYATGQKMIRQSDDQII
NYILKEYDGRKMVVLAPVVKGRKGHYRELFQQVAKLGFTKVRVDGELLDLTPKMQVDRYK
IHDIEIVIDRLVVKEEDRFRLSGSVQNALTQGKGTMLVLDADKKKDNTQFFSRFLMDPAT
GIAYDDPAPNTFSFNSPYGACPTCNGLGEVQEITEETVMPDKKLSISRGGIAPLGEYRDI
WIFQQLGLILKKNKASLSTPIEKLPADLVERLLYGVPEDEDADPKKANYTEPFEGIIPFL
RRQMESESDNIREWIQQYTQAKECPECHGFRLKKESLHFKIADHHIGQLSVMDLSELAAW
FEGLEDRLSERQNLIARELLKEIRKRIGFLLEVGLDYLNLHRSVRTLSGGESQRIRLATQ
IGTQLVGVLYIMDEPSIGLHQRDNERLIKALQHLRDLGNSVIVVEHDKDMILHADHVLDI
GPGAGIHGGQIVAQGTPSEIFTSGSLTSQYLSGQKHIELRKKKRAGEGNELVLRGAKGHN
LKNVTAKFPLGKLIAVTGVSGSGKSSLIHDTLYPILNQHFFNAKREPLAYDKIEGLEFID
KVIEVDQSPIGRTPRSNPATYTGVFTEIRQLFANLPEAKIRGYGPGRFSFNVKGGRCETC
EGAGMRTIEMNFLPDVHVPCETCKGRRYNRETLEVRFKGKSITDVLDMTVEKAVEFFEFQ
PRILRKIQTLNEVGLGYLTLGQQATTLSGGEAQRVKLATELSKKDTGKTFYILDEPTTGL
HFEDINHLSVVLHKLADKGNTVLIIEHNLDLIKVADHLIDIGPEGGGAGGTIVAQGTPEQ
VAKAGKGHTGRFLAEELKLSKYAEA
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaaatcaaccgccgcttctgtttcttcccccgctgcccccaaaccggccgcg
gctcccaaccctacccgttcggccaaggcggcgaaacccacggcaaccacggttgagccg
gctcccaagcccaccaagtccccgaaaccggttaaggcgcccaagtcggccgccgccgcc
gtagccgatggcactaaccaccacagcaccgctgccgtgcaggccgtgccgcgccaggag
caggtgagcgaggccgtgttggaaaaccaggcccgcatccagggtcagttgctgggcccg
gccgatctggaagcgccctacattgaggtgtacggagcccgggagcacaatctcaagaac
gtgtccgtgaagattccgcgcgggcggctggtggtgttcactggcatttcgggctcaggc
aagtcgtcgttggcgtttgatacgatttacgccgagggccagcgccgctacatggaaacg
ttttcggcctacgcccgcagctttatgggcgggctggagcggcccgacgtggacaagatt
gagggcttgtcgccggtaatcagcatcgagcagaaaaccacctcgcgcaacccccgctcc
acggtaggcaccatcaccgagatttacgacttcctgcgcctgctctacgcccgcactgcc
gaggcgttcagctacgccacgggccagaagatgatccggcagagcgacgaccagatcatc
aactacatcctgaaggagtacgacggccgcaaaatggtggtgctggctccggtggtgaag
ggccgcaaaggccactaccgcgagctgtttcagcaggtggccaagctcggcttcaccaag
gtgcgcgtcgatggcgagttgctcgacctcacgcccaagatgcaggtggaccgctacaaa
atccacgacatcgaaatcgtcatcgaccgactggtggtgaaggaggaggaccggttccgc
ctctccggctcggtacagaatgccctcacccagggcaagggcaccatgctggtgctggat
gccgacaaaaagaaggacaacacccagttcttctcccgcttcctgatggacccggccacc
ggcattgcctacgatgacccggcccccaacacgttcagcttcaactcgccctacggggcc
tgccctacctgcaatggcctgggcgaagtgcaggaaatcaccgaggaaacggtgatgccc
gacaagaagctcagcatcagccgcggcggcattgcgcccctgggcgagtaccgcgacatc
tggattttccagcagctgggcctgattctcaagaaaaacaaagccagcctcagcacgccc
atcgaaaagctgcccgccgacctggtggagcggctgctctacggcgtgcccgaggacgag
gacgcggaccccaaaaaggccaactacaccgagcccttcgagggtatcatcccgtttctg
cgccgccagatggagtcggagtccgacaacatccgggagtggattcagcagtacacccag
gccaaggagtgccccgagtgccatggtttccgcctcaaaaaggagtcgttgcacttcaag
attgccgaccaccacatcgggcagctctcagtgatggacctcagcgagctggccgcgtgg
tttgaagggctggaagaccgcctctcggagcgccagaacctgattgcccgcgagctgctg
aaggaaatccgcaagcgtatcggcttcctgctggaagtgggccttgactacctgaacctg
caccgctcggtgcgcacgctctcgggcggcgagtcgcagcgtatccgcctagccacccag
attggcacccagttggtgggcgtgctctacatcatggacgagcccagcatcggcctgcac
cagcgcgacaacgagcggcttatcaaggccctgcagcacctgcgcgacttgggcaactcg
gtgattgtggtggagcacgacaaggacatgatcctgcacgccgaccacgtgctcgacatt
ggtcccggcgcgggcatccacggcggccagatcgtggcccagggcacgccctccgaaatc
ttcaccagcggctcgctcacctcgcagtacctcagcgggcagaagcacattgaactgcgc
aagaaaaagcgggctggcgaaggcaacgagttggtgctgcgcggcgccaaaggtcataac
ctcaaaaacgtgacggccaagttcccgctgggcaagctcattgccgtcacgggcgtgtcg
ggctcgggcaagtcgtcgctcatccacgatacgctgtaccccatcctcaaccagcacttc
ttcaatgccaagcgcgagccgctggcgtatgataagattgagggattggagttcattgat
aaggtgattgaggtggaccagtcgccgattgggcgcacgccgcgctccaacccggccacc
tacaccggcgtgttcaccgaaatccgccagctgtttgccaacctgcccgaggccaaaatc
cgcgggtacgggccgggccgcttctccttcaacgtgaagggggggcgctgcgaaacctgc
gagggcgccggcatgcgcaccatcgaaatgaatttcctgcccgacgtacacgtgccctgc
gaaacctgcaaaggccgccgctacaaccgcgaaacgctggaagtgcgcttcaaaggcaag
agcataaccgacgtgctcgacatgaccgtggaaaaggccgtggagttcttcgagtttcag
ccccgcatcctgcgcaaaatccagacgctgaacgaagtgggcctgggctacctcaccctg
ggccagcaggccaccacgctgagcggcggcgaagcccagcgcgtgaagctggccacggaa
ctcagcaaaaaggacaccggcaagacgttctacatcctcgacgagcccaccaccggcctg
cacttcgaggatatcaaccacctctccgtcgtcctgcacaagctggccgataagggcaac
accgtcctcatcatcgagcacaacctcgacctgatcaaggtagccgaccacctcatcgac
atcgggccggaaggcggcggggcggggggcaccatcgtggcccaaggcacgcccgagcag
gtggccaaagccggcaaaggccataccggccgtttcctggctgaggagctgaagctgagc
aagtacgcggaggcgtga
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