Hymenobacter swuensis: Hsw_2487
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Entry
Hsw_2487 CDS
T03055
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hsw
Hymenobacter swuensis
Pathway
hsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hsw_2487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsw03019
]
Hsw_2487
03009 Ribosome biogenesis [BR:
hsw03009
]
Hsw_2487
Enzymes [BR:
hsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hsw_2487
Messenger RNA biogenesis [BR:
hsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hsw_2487
Ribosome biogenesis [BR:
hsw03009
]
Prokaryotic type
rRNA helicases
Hsw_2487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHJ98082
UniProt:
W8F234
LinkDB
All DBs
Position
complement(2795199..2797112)
Genome browser
AA seq
637 aa
AA seq
DB search
MENETVKTKFSELTLSEEMQRAITEVGYEEASPIQAAGIPVLLQGRDVIGQAQTGTGKTA
AFSIPAIERVDTDSREVQCLVLCPTRELAVQVSGEIQKLGKYKRGLAVVPIYGGSSYDRQ
FRALERGVQIVIGTPGRVMDHIERGTLKLEHCKMIILDEADEMLDMGFRDDIETVLKKMP
EDRQTVFFSATMSKPIMEMTKRYQKDPQIVKVNHQEMTVTNIEQSYFEVRGPQKKDVLTR
LIDMYNIKSGIVFANTKRMVDEIVGDLQAKGYFAEGLHGDMGQQQRQNTLDKFRKGTLEI
LVATDVAARGIDVDNVEVVVNYDLPADEEYYVHRIGRTGRAGKQGKAFTFVSGRDIYKLR
DIMRFTKANIKQERVPSFEDVSEVKTTLMLNSIKEVIEKGNLDKYVARVQRLIDQDQEDG
ITSLDVAAALLKMTMKEDKRAQESLDASRTQGAARAGFTRLFVTMGKKDRLHPRDIVDLI
AENTSLTASKVGDIALYDKFSFVEVPNEFVEEVVSQLGRSSIQGRPVAFNIATPRQEGDA
QQEGGNRGGFGGGSDRPRRAPGSFGGGERREGGSSYGGNRGGGSFGGNRGGGSYGGDRRE
GGSSYGGNRGGGSYGGGNRREGGSSYGGGYKGKRDDS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaaccgttaagaccaagttcagcgagctgaccctctctgaagaaatgcag
cgtgccatcaccgaagttggctacgaagaagcatcccccatccaggccgccggtattccg
gtattgctccagggccgcgacgtaatcggccaggcccagaccggcaccggtaaaaccgcc
gccttctccatccccgccattgagcgggtcgataccgactcgcgtgaagtgcagtgcctt
gtgctctgccccacccgtgagctggcggtgcaggtttcgggcgaaatccagaaactgggc
aaatacaagcgtggtctggccgtggtgccgatctacggtggctcttcttacgaccgtcaa
ttccgtgctttggagcgtggtgtgcagatcgtaattggtacgcccggccgcgtaatggac
cacatcgagcgtggtacgctcaagctggagcattgcaaaatgatcatcctcgatgaggcc
gacgaaatgctcgacatgggcttccgcgacgatattgagacggtgctcaagaaaatgccc
gaagaccgccagacggtattcttctcggctaccatgagcaagccgatcatggagatgacc
aagcgctaccagaaggatccgcagatcgtgaaggtgaaccatcaggaaatgacggttacc
aacatcgagcagagctacttcgaggtgcgcggtccgcagaaaaaagacgtgctgacccgc
ctcatcgacatgtacaacatcaagtcgggcatcgtcttcgctaacacgaagcgcatggtc
gacgagattgtgggcgacctgcaagctaaaggctatttcgccgaaggcctgcacggcgac
atgggccagcagcagcgtcagaacacgctcgataaattccgcaaaggcaccctcgaaatc
ctggtagctaccgacgtagccgcccgcggcatcgacgtagacaacgtggaagtggtagta
aactacgacctgcccgctgacgaggagtactacgtgcaccgcatcggccgtactggccgc
gccggcaagcagggcaaagccttcaccttcgtgagcggccgcgacatctacaagctgcgc
gacatcatgcgcttcaccaaagccaacatcaagcaggagcgtgtgccgtccttcgaagat
gtgtcggaggtgaaaaccacgctgatgctcaactccatcaaggaggtaattgagaaaggc
aacctcgacaagtacgtggcccgcgtgcagcgcctcatcgaccaggaccaggaggatggc
attacgtcgctcgacgtagctgctgctctgctgaaaatgacgatgaaggaagacaagcgc
gcccaggaaagcctcgacgccagtcgcacccagggtgccgcccgcgccggcttcacccgt
ttgttcgtgacgatgggcaagaaggaccgtctgcacccccgcgacatcgtggacctgatt
gccgaaaacaccagcctcacggccagcaaagtcggtgacattgccctctacgataagttc
agcttcgtggaagtaccgaatgagttcgtggaagaagtggtgagccagctcggccgcagc
tccatccagggccgtccggtggccttcaacattgctacgccccgccaggaaggcgatgcg
cagcaggaaggtggtaaccgcggcggcttcggcggcggcagcgaccgtccacgtcgggct
cccggcagcttcggtggtggcgagcgtcgcgaaggcggcagcagctacggtggtaaccgt
ggtggtggctccttcggcggcaaccgtggtggtggctcctacggcggcgaccgtcgggaa
ggcggcagcagctacggcggcaaccgcggcggcggctcctacggcggcggtaaccgccgc
gagggtggcagcagctacggcggcggctacaaaggcaagcgcgacgacagctaa
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