Hymenobacter swuensis: Hsw_2988
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Entry
Hsw_2988 CDS
T03055
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hsw
Hymenobacter swuensis
Pathway
hsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hsw_2988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsw03019
]
Hsw_2988
Enzymes [BR:
hsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hsw_2988
Messenger RNA biogenesis [BR:
hsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hsw_2988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Helicase_C_2
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHJ98583
UniProt:
W8F105
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All DBs
Position
3391749..3393479
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AA seq
576 aa
AA seq
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MTFHEFNLHDDLLAGIDAMNYQNATPIQEQAIPRILEGKDLIACAQTGTGKTAAYLLPLL
DKISHAKHGTTSTLVLVPTRELATQIDEQVTGFGYFVEASSIAIYGGGKSEGWEQQKRAL
TSGADIIIATPGRLIAHMQMGYVKFEDLKYLVLDEADKMMDMGFSDDILNIVRQLPKERQ
TLLFSATMPSKIRDFSQQLLKSPEEIRLAVSKPAAGIDQQFYMAFDRQKIYLLEHIIKTQ
DVQSMVLFTSQKAAVGGIVRAINKLGIEARGISSDRTQEEREEIMRAFKNKQFPILVATD
VLSRGIDIDSLSHVVNYDIPRAAEDYVHRIGRTARAATKGTAITFIADQDQDRVLKIEKL
IEREVEKQNITEGLGLGEAPEFDPKRFSGLRGKVGGRPERGPRSGGAGGSGGGRDRGPRP
EGGGGGRSGGGRDGARPNRGDSKPDADQQARIAKAQATLAALDAGQAPAQPYQRPPREDR
PEGSDSRPRREPREPRAEGEARPPRAPRPEGEARPPREPRAPRPEGEAAAEPRAEGDKAE
GQRRRKRGGRNRSGRGPRPEGGAATEASAPVAPAAE
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtttcacgagtttaacctgcacgatgacctgctcgcgggcatcgatgccatgaat
taccagaatgccacgcccatccaggagcaggccattccccgcattctggaaggcaaggac
ctgattgcctgcgcccagaccggtaccggcaaaaccgccgcctacctgctgccgctgctc
gacaagatttcgcacgccaagcacggcaccacctccacgctggtactggtgcccacccgc
gaactggctacgcagattgatgagcaggtaacgggcttcggctacttcgtggaagccagc
tccattgccatctacggcgggggcaaatccgaaggctgggagcagcagaagcgcgccctt
acctccggcgctgacatcatcattgccacacccggccgcctcattgcccacatgcagatg
ggctacgtgaagttcgaggacctgaagtatctggtgctcgacgaggccgataagatgatg
gacatgggcttctccgatgacatcctcaacatcgtgcggcagctgcccaaagagcgccag
acgctgctgttctcggccaccatgcccagcaaaatccgcgacttttcgcagcagctgctc
aagagccccgaggaaattcgtttggccgtttccaagcccgccgctggcatcgaccagcag
ttctacatggccttcgaccgccagaagatctacctgctcgagcacatcatcaaaacccag
gacgtgcagagcatggtgctgttcactagccagaaagcggctgtgggcggcattgtgcgg
gccatcaacaagctgggcatcgaggccaggggcatcagctccgaccgcacccaggaggag
cgtgaggaaatcatgcgcgccttcaaaaacaagcagttccctatcctcgttgccaccgac
gtgctgagccggggcattgacatcgactcgctgagtcacgtggtaaactacgacatcccg
cgcgccgccgaggattacgtacaccgtatcgggcgcacggcccgcgccgccaccaaaggc
acggccatcaccttcattgccgaccaggaccaggaccgcgtgctcaaaatcgagaaattg
attgagcgcgaagtagaaaagcagaacatcaccgaaggtctcggcctgggcgaagccccc
gagttcgaccccaaacggttcagtggcctgcgcggcaaagtaggcggccggcccgagcgt
ggcccccgcagcggcggtgctggtggttccggcggtggccgtgaccgtggcccccgcccc
gaaggcggcggtggcggccgctccggcggtggccgcgacggtgcccgccccaaccgcggc
gacagcaaacccgacgccgatcagcaggcccgcattgccaaagcccaggccaccctggcc
gccctcgacgccggccaagccccggcccagccctaccagcgtcccccccgcgaagaccgc
cccgaaggcagcgacagccgcccccgccgcgagccgcgtgaaccccgcgccgaaggcgaa
gctcgtccacctcgggctccacgccccgaaggcgaagcccgcccgccccgcgaaccgcgt
gccccgcgccctgaaggcgaagccgctgctgagccacgggctgaaggcgataaagccgaa
ggccagcgccgccgcaagcgcggaggccgcaaccgctccggccgtggcccgcgccccgag
ggcggtgccgccaccgaagcttctgccccggtagccccggccgctgaataa
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