Hymenobacter swuensis: Hsw_3260
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Entry
Hsw_3260 CDS
T03055
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hsw
Hymenobacter swuensis
Pathway
hsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hsw_3260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsw03021
]
Hsw_3260
03019 Messenger RNA biogenesis [BR:
hsw03019
]
Hsw_3260
Transcription machinery [BR:
hsw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Hsw_3260
Messenger RNA biogenesis [BR:
hsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Hsw_3260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_25
ATPase_2
NACHT
AAA_22
AAA_16
AAA
Motif
Other DBs
NCBI-ProteinID:
AHJ98855
UniProt:
W8FAY0
LinkDB
All DBs
Position
complement(3703182..3705410)
Genome browser
AA seq
742 aa
AA seq
DB search
MYTIDELKDRLLSELKEVAETLKVGNFKKLSKQDLIYKILDQQAITPTDKLPQKVKSGEV
AAPAVSAAPYTEPVEAAAAKTPAVKAAPAAKTTGTRAARPAAARPARGKAAAAPAEVTTS
ETEAAPVAIAGPVAPDAPVVATEPTPVAAEVVVAEPTGTAPAEAAPAEDTASIERPVKLY
QRPERRTRTDRAGRPIVAGAEATATEEEAAPAAETVVETPVAPMRDPRPIDPTAPAPLRE
GRPEQPRIFRDGREYIPREARTDAARAEIRPDSSSRSEQPRDLRNDQPRTDGRQEGALRD
GSRPEQPRNLREGGRPDARDQREQRREERYAARELQRQQRQEQRLTERQNGTAEQPTRVE
RAEQRPARQDFDITIPGDGTLEMMPDGGYGFLRSPFYNYLASPDDIYVAPQQVKQFGLKA
GDTVKCTIRPPRDGEKYFALVGVDGINGRSVEDARDRIPFSNLTPLFAEERLKLTTKSAQ
YSTRIMDLFAPIGKGQRGLIVAQPKTGKTVLLQEIANAISENHPEVYLMILLIDERPEEV
TDMARSVKAEVLSSTFDETADRHVKIATIAMEKAKRLVECGHDVVILLDSITRLARAYNT
VQPASGKILSGGVDANALHKPKRFFGAARNVENGGSLTIVATALIETGSKMDEVIFEEFK
GTGNMELQLDRKLANKRIFPAIDVPASGTRREDLLMSKDELNRIWVLRKFMSDMTAAEAM
EFLKDRMKGTRDNNEFLLAMNG
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgtacactattgacgagttaaaggaccgtttgctgtccgaactaaaagaagttgctgag
accctaaaggttggtaatttcaaaaaactcagcaaacaggatcttatctataagattctc
gaccagcaggctattacgcccactgataagcttccccaaaaagtgaaatccggcgaagtt
gccgcgcccgctgtgtccgccgcgccctatacggaaccggtggaagccgctgctgctaaa
acgcctgctgtcaaagcggctcctgctgccaaaaccaccggtacgcgcgctgcccgcccg
gcggcggctcgcccggctcgcggcaaagccgccgccgcccccgccgaagtaaccaccagt
gaaaccgaagctgcccccgtagccattgctgggcccgttgccccggacgctccggtggtg
gccactgaaccaactccggttgccgccgaagttgtggtggctgaaccaactggtacggct
cccgccgaagcagctccggctgaggatacagccagcatcgagcgtcccgtgaagctgtat
cagcggccggagcgccgtacgcgcactgaccgggccggtcggcctattgtagcaggtgct
gaggccacagcaacagaagaggaagctgctccggctgctgaaacggtcgtggaaactccc
gtagctccgatgcgtgacccccgtcccatcgaccccactgcgcctgcccccctgcgtgaa
ggccgccccgagcagccgcgtattttccgcgacggccgggagtacattccccgggaagcg
cgtacggacgctgcccgcgccgaaatccggcccgacagtagcagccgctctgagcagccc
cgggacctgcgcaatgatcagccccgcactgatggccgtcaggagggtgccctgcgcgac
ggcagccgccccgagcagccccgcaacctgcgcgagggaggccgccccgatgcccgcgac
cagcgggagcagcgccgcgaggaacggtatgcggcccgggagctgcaacgccagcagcgc
caggagcaacgcctcaccgagcgccagaacggtactgccgagcagccgacccgtgtcgag
cgggcggagcagcggccggcacgtcaggatttcgatattaccattcccggggacggaacg
ctggaaatgatgcccgacggcggctatggtttcctgcgcagccctttctataactacctc
gcttcccccgacgatatttatgtggcgccacagcaggtgaagcaattcggcctgaaagcc
ggcgacacggtgaaatgcaccatccggcccccgcgcgacggggagaaatactttgcgctg
gtaggcgtggatggcatcaatggtcgctcggtggaagacgcccgggaccggattccgttc
agcaacctcacgccgctgtttgctgaggaacgtctgaagctcaccaccaaatcggcccag
tacagcacccggatcatggatctgtttgcgcccattggcaaaggccagcgcggtctgatt
gtggcgcagcccaaaacgggtaaaaccgtgctgctccaggaaattgccaacgccatcagc
gagaaccatccggaggtgtacctgatgattctgctcattgatgaacgcccggaagaggta
acggacatggcccgctcggtgaaagctgaagtgctgagctctaccttcgatgaaacagct
gaccgccacgtaaaaattgccaccattgccatggagaaggccaagcgcctcgtggagtgt
ggccacgacgtggtgattctgctcgactcgattacccgcctggcccgtgcctacaacacg
gtgcagccggcttcgggcaaaattctctcgggtggtgtagatgccaacgcactgcacaaa
cccaagcgcttcttcggggccgcccgtaacgtggaaaacggtggctccctgaccatcgtg
gctacggccctcatcgaaaccggctccaaaatggacgaggttatctttgaggaattcaaa
ggcaccggtaacatggaactgcagctggaccgcaagctggccaacaagcgcatcttcccg
gccatcgacgtgccggcttccggtacccgccgcgaagatctgctcatgagcaaggacgaa
ctgaaccgcatctgggtactgcgcaagttcatgtcggacatgacggctgccgaagctatg
gagttccttaaggaccgcatgaaaggcacccgtgacaacaacgagttcctgctggccatg
aacggctag
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