Hymenobacter swuensis: Hsw_4243
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Entry
Hsw_4243 CDS
T03055
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hsw
Hymenobacter swuensis
Pathway
hsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hsw_4243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsw03019
]
Hsw_4243
03016 Transfer RNA biogenesis [BR:
hsw03016
]
Hsw_4243
Enzymes [BR:
hsw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hsw_4243
Messenger RNA biogenesis [BR:
hsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hsw_4243
Transfer RNA biogenesis [BR:
hsw03016
]
Prokaryotic type
tRNA degradation factors
Hsw_4243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AHJ99838
UniProt:
W8F4D5
LinkDB
All DBs
Position
4828869..4831412
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AA seq
847 aa
AA seq
DB search
MKEKDEPAAPRASRAKAARGDKATTTTTEISQDLVFRIFRDNPGKVLAYRQLSRRLGVTT
KEQRDEIFAHLKNLKKSGLLTLVQNDEYRLTDDEAVLAAAPAPTPKGRKRPAAAAEATVA
QPAAQPADVEFGQDPLVHRRREAGFDFPGDNRRSGRRSGKPDFTDTVVGTVDLASQKFAF
VVSEDSEQDIRVFTDRLMFAMEGDTVRVRLRGSRDGKPVGDVVEVIKRERAELVGRLQMQ
GSIGFVKPDNRKLYFDALVTPEHLGGARHGDKVLVRITEFPESDSGSLPSGEVIRNFGPA
GQNEAEINAIMAEFGLPFEFPAEVEEESEAIPLEIPQAEIARRRDFRHITTFTIDPADAK
DFDDALSIQQLENGHWEIGVHIADVTHYVRPDMALEKEARHRATSVYLVDRVIPMLPERL
SNGLCSLRPNEDKLTFSAVFELDENGKLYSSWFGKTVIHSDRRFAYEDAQERIEGLDSDY
TAEVQLMNSIAKKLCAARFRQGAISFETQEVKFRLDENGKPLGVFVKERKDAHKMIEEFM
LLANRKVAEFVFKLRNRKPRFTMVYRVHDAPDPERLQTFALFAKKFGHQLDLTNPRTIST
ELNDLSTDVVGRPEQNVIQGLAIRTMAKATYTTDPRGHFGLAFEHYSHFTSPIRRYPDMM
AHRLLEHYLEGGGNVDVEPIEEECKHSSTREKLAASAERASIKFKQVEFLQDHIGSEFTG
VISGLTEWGVYVEIPENKCEGMVRVSDIPGDFYELDKDNYRLVGQRTKRIIQFGDEMQIV
VKAANLLDRTIDFELVDNRPDSVKSQDRDDRSGRRGYRPERSSKGGRPDGGGKSGSGKSA
SGSKRRR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaagacgaacccgccgccccccgcgcctcccgcgcgaaggcagcccgtggc
gataaagccactacaactaccaccgaaatcagccaggacctggtgtttcgcatcttccgc
gacaaccccggcaaggtgctggcctaccgccaactttcccgccgcctgggcgtgaccacc
aaagagcagcgcgacgagattttcgcgcacctcaaaaaccttaagaaaagcggcctgctc
acgctcgtgcagaacgacgagtaccgcctcaccgacgacgaagccgtgctggccgccgcg
cctgcgccgacgcccaagggccgtaagcgtccggctgctgctgccgaggctaccgttgct
caaccggctgcccagcccgccgacgtggagtttggccaagacccgctggtgcaccgccgc
cgtgaggccggcttcgacttccccggcgacaaccgccgctcgggccgccgcagcggcaag
cccgactttaccgacaccgtagtgggcaccgtggacctggcctcgcagaagtttgccttc
gtggtgagcgaggacagcgagcaggacatccgggtgttcactgaccgcctcatgtttgcc
atggaaggcgacacggtgcgggtgcggctgcgcggctcccgcgacggcaagcctgtgggc
gacgtagtggaagtcattaagcgggagcgggccgaactggtgggccgcctgcagatgcag
ggctccatcggcttcgtgaagcccgataaccgcaagctttacttcgatgcgctggtgacg
cccgagcacttgggcggggcccgtcacggcgacaaggtactggtgcgcatcacggagttt
ccggagagtgactcgggtagcctgccctcgggtgaggtgattcgcaacttcgggccggct
ggtcagaacgaggcggagattaacgccatcatggccgagttcgggctgccgtttgaattc
ccggccgaggtagaggaggagtcggaagccattccgttggaaatcccgcaggccgagatt
gcgcgccgccgcgacttccgccacatcaccaccttcaccatcgaccccgccgacgccaag
gacttcgacgatgccctcagcatccagcagctcgaaaacgggcactgggaaattggggtt
cacattgccgacgtgacgcattacgtgcggcccgatatggccctggaaaaggaagcccgg
caccgcgctacctccgtgtacctcgtggaccgcgtgattcccatgctgcccgagcgcctc
agcaacggcctctgttccctgcgtcccaacgaggacaagcttaccttctcggccgtgttt
gagctggatgagaacggcaagctctatagctcctggttcggcaaaaccgtcattcactcc
gaccgtcgcttcgcctacgaagatgctcaggagcgcatcgaaggtctggactccgactac
acggcggaggtgcagctgatgaacagcattgccaagaagctgtgcgccgcccgcttccgg
cagggggccatcagcttcgaaacccaggaggtgaagttccggctggatgaaaacggcaag
ccgctgggcgtgttcgtgaaggagcgcaaggatgctcacaagatgattgaggagttcatg
ctactggccaaccgcaaggtggccgagttcgtgttcaagctccgcaaccgcaagccccgc
ttcacgatggtgtaccgcgtgcacgatgcgcccgaccccgagcggctgcagaccttcgcg
ctgttcgccaagaaattcggccaccagctcgacctcaccaacccgcgcaccatcagcacc
gagctcaacgatttgagcaccgacgtggtgggccggcccgagcagaacgtgattcaggga
ctagccatccgcacgatggcgaaggccacctacaccaccgacccccgcggccacttcggc
ctagccttcgagcactactcgcacttcacctcacccatccgtcgctaccccgatatgatg
gcgcaccgcctgctggagcactacctggaaggcggcggcaacgtggacgtggagcctatc
gaggaagagtgtaagcactcctcaacgcgggagaaactggctgccagcgccgaacgggcc
agcatcaagttcaagcaggtggagttcctgcaggaccatatcggctcggagtttacaggc
gtcatctcgggcctgaccgagtggggcgtgtatgtggagattccggaaaacaagtgcgaa
ggcatggtgcgcgtgagcgacatcccgggcgacttctacgagctggacaaggacaactac
cgcctcgtgggtcagcgcaccaagcgcatcatccagttcggtgacgagatgcagattgtc
gtgaaagcggccaatctactcgaccggaccatcgacttcgagctggtggataaccgcccc
gactcggtgaaaagccaggaccgcgacgaccggagcggccgccggggctaccgccccgag
cggagcagcaaaggcggccgccccgatggtggcggcaagtccggcagtggcaagtcggcc
agtggcagtaagcgccgccgctaa
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