Billgrantia sulfidoxydans: HNO51_04640
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Entry
HNO51_04640 CDS
T08035
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hsx
Billgrantia sulfidoxydans
Pathway
hsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNO51_04640 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsx03019
]
HNO51_04640 (rnr)
03016 Transfer RNA biogenesis [BR:
hsx03016
]
HNO51_04640 (rnr)
Enzymes [BR:
hsx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HNO51_04640 (rnr)
Messenger RNA biogenesis [BR:
hsx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HNO51_04640 (rnr)
Transfer RNA biogenesis [BR:
hsx03016
]
Prokaryotic type
tRNA degradation factors
HNO51_04640 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QTP54027
UniProt:
A0ABX7W315
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All DBs
Position
965245..967644
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AA seq
799 aa
AA seq
DB search
MTHWTLSDDPHASREAHKYDKPAPSREYLLARLEAYGKPITHEKMSRLLGLEDEELQEAV
RRRLAAMERDGQVLRNRAGAYALIDKLDLIKGKVLGHRDGFGFVLRDDGKKPDLVLPPRQ
MRRVFHGDYVLVRISGRDRRGRDEATIAEVLSRNTQTIVGVYRENTSEFGVLIPENPRIT
QEVIVPHSACGGARDGQVVSARIVQQPETRVQPVGEVVEVLGERMDPGMEIDIAIRSYEI
PAEFPPEVHDQIAGMSAEVAEQDKQHRIDLRHLPLVTIDGEDAKDFDDAVYAWKTKSGSW
KLLVAIADVSHYVRPGSALDQEAIRRGNSVYFPGQVVPMLPELLSNGLCSLNPHVDRLAM
VCEMNISKSGTISRYHFYEAVFQSHARLTYNKVAAILDDDDPEGDALRLEYRELVKPLKE
LHQLYKVLRQAREERGAIDFETTETAIVFNEERKIEKIVPRTRNDAHKLIEECMLAANVA
TARFLDKHDLPALYRIHERPAPERLDKLRLFLNELGLSVGGGDEPTPQDYQALAEAIRGR
PDADVIQTVMLRSMSQAVYSPHNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTNTVLRAEGGPVEPPSKWCPYTFEQMLELGEHCSMTERRADDATRDVEDWLKCEFMSD
KLGEVYEGTIASVTQFGIFVRLDEVYVEGLVHVTSLPSDYYHYEPEKHRLKGERTGMSYR
LGDGVTVQVARVDLNDRKIDFALEDEKPRPRREPRKRRGAGEATVSPEPGVGKAQADDKG
GKGRGGKRRRGPRKPKARS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgacccattggacgctcagcgacgacccccatgccagccgcgaggcccacaagtacgac
aagccggcgccaagccgcgagtacctgctggcgcgcctggaagcgtatggcaagccgatc
acccacgagaagatgagtcgcctgctgggcctcgaggacgaggagctgcaggaggcggtg
cgccgccggctggcggccatggagcgcgacggccaggtgctgcgcaaccgcgccggcgcc
tatgccttgatcgacaagctcgacctgatcaagggcaaggtgctggggcatcgcgacggc
ttcggtttcgtgctgcgcgacgacggcaagaagccagacctggtgctgccgccgaggcag
atgcgccgggtcttccatggcgactacgtgctggtgcgcatcagcgggcgcgaccgccgc
ggccgtgacgaggcgaccatcgccgaggtgctgtcgcgcaatacccagaccatcgtcggg
gtctatcgcgagaacacctccgagttcggcgtgctgattcccgagaacccgcgcatcacc
caggaagtgatcgtcccgcatagcgcctgcggtggggcgcgcgacggccaggtggtgtcg
gccaggatcgtgcagcagcccgagacccgggtgcagccggtgggagaggtggtcgaggtg
ctcggcgagcgcatggatccgggcatggaaatcgacattgccatccgcagctacgagatc
ccggccgagtttccccccgaggtccacgatcagatcgccgggatgtccgccgaggtggcc
gagcaggacaagcagcatcgcatcgacttgcgtcacctgccgctggtgaccatcgacggc
gaggacgccaaggatttcgacgacgcggtatacgcctggaagaccaagtccgggagctgg
aagctgctcgtcgctattgccgacgtctcccactacgtgcgtccgggcagtgcgctcgac
caggaggcgatacgccgcggcaactcggtctacttccccgggcaggtggtgccgatgttg
cccgagctgctctccaacgggctgtgctcgctcaatccgcacgtcgaccgcctggccatg
gtttgcgagatgaatatctccaagagcgggacgatcagccgctatcacttctacgaggcg
gtgttccagtcgcatgcccggctcacctacaacaaggtggcggcgattctcgacgacgac
gatcccgagggcgatgcgctgcgcctcgagtatcgcgagctggtcaagccgctcaaggag
ctgcaccagctctacaaggtgctgcgccaggctcgcgaggagcggggtgccatcgacttc
gagaccaccgaaacggcgatcgtcttcaacgaggagcgcaagatcgagaagatcgtgccg
cgcacccgcaacgatgcccacaagctcatcgaggagtgcatgctggcggccaacgtggcc
accgcgcgcttcctcgacaagcacgacctgccggcgctctaccgcatccacgagcggccc
gcgccggagcgcctcgacaagctgcgcctgttcctcaacgagctggggctctcggtgggc
ggcggcgacgagcccacgccgcaggactaccaggccctggccgaggcgatccgcggtcgc
ccggacgccgacgtgatccagaccgtgatgctgcgctcgatgagccaggcggtctattcg
ccgcacaacgaagggcacttcggcctggcttatccggcctacgcccatttcacctcgccg
attcgccgctaccccgacctgctggtgcaccgggcgatccgctcggtgatccgcgggccg
cgccagaccaacacagtgctgcgcgccgagggggggccggtggagccacccagcaagtgg
tgcccctacaccttcgagcagatgctcgagctcggcgagcactgctcgatgaccgagcgc
cgcgccgacgacgccacccgcgacgtggaggactggctcaagtgcgagttcatgtccgac
aagctcggcgaggtctatgaaggcaccatcgcctcggtgacccagttcggtatcttcgtg
cgcctcgacgaggtctatgtcgaggggctggtgcacgtcacctcgctgccctccgactat
taccactacgagcccgagaagcaccgcctcaagggcgaacgcaccggcatgagctaccgc
ctgggtgacggcgtcacggtccaggtggcgcgcgtggacctgaacgatcgcaagatcgat
ttcgccctcgaggacgagaagccgcggcccaggcgcgagccgcgcaagcggcgcggggca
ggcgaggcgaccgtttcccctgagcccggcgtcggcaaggcccaggccgatgacaagggt
ggcaagggcaggggtggcaagcgacgtcgtggcccgcgcaagccgaaggcgcgtagctga
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