Billgrantia sulfidoxydans: HNO51_13295
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Entry
HNO51_13295 CDS
T08035
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hsx
Billgrantia sulfidoxydans
Pathway
hsx02020
Two-component system
hsx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hsx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HNO51_13295
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HNO51_13295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsx03021
]
HNO51_13295
Transcription machinery [BR:
hsx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HNO51_13295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QTP55575
LinkDB
All DBs
Position
2867227..2868654
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AA seq
475 aa
AA seq
DB search
MAMKASLQLRVGTQLTMTPQLQQAIALLQLSTLDLRQEIQQALESNPMLELDDGFGEQAV
SETPSDDWASEIPSELSTDSDWTDTYPDHGTGSGSGAATGEGPDFERQASAQTLAGHLIW
QLAMTDLNDRQRLIAESLIDAVDAAGYLAHPLEEIRDGLRRQGLEGLPTREVEQVLLRLQ
QFEPTGVFARDLRECLMLQLAALPDDTPLLPQTRRLVRQFLEALAADDRRLLKRRLGLDD
ESLDQVIALVRSLDPRPGSDFAEVGSSYVTPDLVAYHDESGWRVELNAEALPRLRIQPDY
VALVRRADKSQDNQFLKDHLQEARWLIKSLASRNDTLLRVGREIMARQIEFLEQGEEGMK
PLVLADIAQAVEMHESTISRVTTQKFIHTPRGVFELKYFFSSHVGGSGDGDVHSSTAIRA
RIRKLIADEPPRKPLSDSRLVDLLAEDGIQVARRTVAKYREALGIPSSSERKRFR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggccatgaaagcgtccctgcaattacgtgtcggcactcagctgaccatgaccccccag
ctgcaacaggccatagccctgctgcagctctcgaccctcgacctacgccaggagatccag
caggcgctggaatccaaccccatgctggaactcgacgacggcttcggcgaacaggccgtc
agcgaaaccccgagcgacgactgggccagcgagatacccagcgaactctccaccgacagc
gactggacggacacctaccccgaccacggcacgggctccggctcaggcgccgccaccggc
gaggggccggacttcgagcgccaagcctcggcgcagaccctcgccggccatctgatctgg
cagctggcgatgaccgacctgaacgaccgccagcgcctcatcgccgagagcctgatcgac
gccgtggacgccgccggctacctggcccaccccctggaggaaatacgcgacggcctgcgc
cgtcagggcctggaggggttgcccacccgggaggtcgagcaggtcctgctgcgattgcag
cagttcgagcccaccggcgtgttcgcccgcgacctgcgcgagtgcctgatgctgcagctg
gcggcgctgcccgatgataccccactgctgccccagacccgccgtctcgtgcgccagttc
ctcgaggcgctggctgccgacgaccgccgcctgctcaagcgtcgcctgggtctcgacgac
gagtcgctggaccaggtcatcgccctggttcgctcgctggatccccgccccggcagcgac
tttgccgaggtcggcagcagctacgtcaccccggacctcgtcgcctatcacgacgaatcg
ggctggcgcgtggaactcaacgccgaggccctgccgcgcctgcgcatccagcccgactac
gtcgccctggtgcggcgtgcggacaagagccaggacaaccagttcctcaaggatcacctg
caggaggcccgctggctgataaagagcctggccagccgcaacgacacgcttctgcgggtg
ggacgggagatcatggcgcgccagatcgagtttctcgagcagggcgaggaaggcatgaag
ccgctggtgctggccgacatcgcccaggccgtcgagatgcacgaatcgaccatctcgcgg
gtgacgacgcagaagttcatccatactccgcgaggcgtcttcgagctgaagtacttcttc
tccagccatgtcggcggaagcggcgacggggacgtccactccagcaccgcgatccgtgcc
cgcatccgcaagctcatcgccgacgagccgccccgcaagccgctctccgacagccgcctg
gtggatctgctggccgaggatggcatccaggtcgcccgccgcacggtggccaagtatcgc
gaagccttgggcatcccctcatcgagcgagcgcaagcgttttcgttga
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