Hydractinia symbiolongicarpus: 130612132
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Entry
130612132 CDS
T09218
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130612132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130612132
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130612132
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
130612132
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
130612132
NCBI-ProteinID:
XP_057289405
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All DBs
Position
10:12119825..12122695
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AA seq
291 aa
AA seq
DB search
MSVEITSPRQKVSLPIYVSNDEKHFVTPGEVITEDTGFMKGHGTYADNADRLAASVAGIV
ERVNKLISVKPFKTRYNGEVGDVVVGRISEVGQKRWRVDTYARLDSVLLLSAVNLPGGEL
RRRSTKDELLMRDYLVEGDLIVAEVQSLFADGSLSLHSRNLKYGKLPEGVLVKVSPSLVR
RCKTHMHNLPFGATVILGNNGYIWIGPLMSAESDLSSRNTSRKSVGISDRHVIARLKNCI
TCLALFGVQLYDTSVTYAYDASLKYEVKELLRPEVQEEVVDVTRNNLAQHI
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtggagattacctcacctagacaaaaagtatcacttccgatatatgtatctaat
gatgaaaagcattttgtcacacctggagaagttattacagaggacacagggttcatgaaa
ggtcatggtacatatgcagacaatgcagatagactagcagcgtctgtggctggtattgtt
gagcgtgtcaacaaacttatatcagtgaaaccattcaaaacaagatacaatggcgaagtc
ggagatgtggttgtcgggcgtatcagtgaagttggacaaaaacgatggcgtgtggatact
tacgcgcggctcgattccgtgcttctgctctccgctgttaacttaccaggaggagaactg
agaaggcgttcaacaaaagatgaacttctgatgagagattatttagtggaaggagattta
attgttgcggaagtgcagtctctgtttgctgatggctctttgtcactacacagtagaaac
ttaaagtatggcaagctgccggagggtgtactggttaaagtttctccgtcgttggtacga
cgttgtaaaacacacatgcataatttgccgtttggtgcgacagttatattaggtaacaac
ggttacatctggatcggaccattgatgtcagctgaaagcgacttatcatcccgaaatacg
tcacggaaaagtgtcggtatatctgaccgacatgttatcgctagattaaaaaactgtata
acttgtttggcactttttggcgtccagttatatgacaccagtgtgacgtatgcgtacgac
gcgtctttaaaatacgaagtgaaagaactgttacgacctgaagtgcaggaagaggttgtc
gatgttacgcggaataatcttgctcagcatatttaa
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