Hydractinia symbiolongicarpus: 130612252
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Entry
130612252 CDS
T09218
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03013
Nucleocytoplasmic transport
hsy03015
mRNA surveillance pathway
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130612252
09122 Translation
03013 Nucleocytoplasmic transport
130612252
03015 mRNA surveillance pathway
130612252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130612252
03041 Spliceosome [BR:
hsy03041
]
130612252
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130612252
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130612252
Spliceosome [BR:
hsy03041
]
Complex C
Other components
EJC/TREX
130612252
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130612252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
Dark_CARD
Motif
Other DBs
NCBI-GeneID:
130612252
NCBI-ProteinID:
XP_057289540
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All DBs
Position
10:9865449..9870403
Genome browser
AA seq
434 aa
AA seq
DB search
MADDVPEEEFIPDYEETSDNEAAGEEGGQVAEQAKKDVKGTYVSIHSSGFRDFLLKPELL
RAIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGQVSVL
VMSHTRELAFQVSKEYERFSKYLSDIKVSVFFGGLSVKKDEQVLKTNCPHIVVGTPGRIL
ALARDKVLNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEMRV
VCKKFMQDPMEVYVDDETKLTLHGLTQHYVKLKDNEKNRKLFDLLDALEFNQVIIFVKSV
QRCIALSALLVEQNFPAIAIHRSMPQEERISRYRQFKDFQKRILVATNLFGRGMDIERVN
IVVNYDMPEDSDTYLHRVARAGRFGTKGLAISFVFDEEDAKVLNDVQDRFEVNVSELPSE
IDVSTYIEGYEAQR
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgatgttccagaagaagaatttattccagattatgaagaaaccagcgataat
gaggcagctggagaagagggtggacaggttgctgaacaagccaaaaaagatgttaaaggg
acatatgtcagtattcacagctccggtttcagggatttcttgttaaagccagagctttta
agagccatagtagattgtggttttgaacatccttcagaagtacaacatgaatgtattcca
caagctattcttggtatggacattgtctgtcaagcaaaaagtggtatgggaaagacggct
gtctttgttctagcaacattacagcagcttgaaccagttgatggtcaagtcagtgtactc
gtcatgtctcacaccagagaacttgcttttcaagtcagcaaagaatatgaaagattttcc
aaatatctctctgacataaaggtttctgtcttttttggtggccttagtgtgaaaaaagat
gagcaagtgttaaagacaaactgtcctcatattgttgttggtactcctggtcgtattctc
gcactagcaagagacaaggttcttaacctgaagcatgtgaaacactttattcttgatgaa
tgtgataaaatgttggaacaacttgatatgagacgagatgtgcaagaaattttccgtatg
acaccacatgagaaacaagttatgatgttcagtgcaacgttaagtaaagaaatgcgagtg
gtgtgcaagaaatttatgcaagatcctatggaagtttatgttgacgatgaaacaaaattg
acgcttcacggtttaacacaacattacgtcaaactaaaggacaatgagaagaatcgtaaa
ttatttgatttattagatgcacttgaattcaatcaggtcatcatatttgtaaagtctgtg
caaagatgtatagcattatctgcattgctggtggagcagaacttccctgctattgcaatt
cacagatcaatgcctcaagaggaaaggatatctcgttaccgtcaattcaaagattttcag
aaacgtattttagtagcaacaaatttatttggtcgtggaatggatatcgaacgtgttaac
attgttgtaaattatgatatgcctgaagattcagatacatacctgcatagggtagctcga
gctggtcggtttggtacaaaaggtttggccatctcattcgttttcgacgaagaagatgcg
aaagtgttaaacgatgtgcaagatcgattcgaagttaatgtgagcgaattgccatctgag
atagacgtgtcgacatatatcgaaggctacgaagcacaacgataa
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