Hydractinia symbiolongicarpus: 130612355
Help
Entry
130612355 CDS
T09218
Name
(RefSeq) SKI2 subunit of superkiller complex protein-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130612355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130612355
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130612355
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130612355
mRNA degradation factors
3'-5' decay
Ski complex
130612355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
ResIII
Motif
Other DBs
NCBI-GeneID:
130612355
NCBI-ProteinID:
XP_057289644
LinkDB
All DBs
Position
10:22758314..22800559
Genome browser
AA seq
1261 aa
AA seq
DB search
MDAQLREGEKKRIDVSKVSPELDFDVIQLGLSGDVKLVTGTSSSPRILPTNTLPLGLPPV
YPDLKSEIEEFLISPQDIPIHAFQTAQQYWQREKDLESLMDTNLSPCPSELAMERDPKTG
KLQSHHEVFKGEVGLNAQNSMSLKRKPGAFTDSVKGESSNCPFWPGGMDLPTLEKFTKSN
IKDDVLELSKDKLLIRPPGFDFDVTLNNEIYSLPGLSSGSDKQTISITDILSVDMDLAAL
YIDVSEKDIAVTQQESPVDVTFSVKEEIPDQILQVNEPEGSLKPKANEKKQWAILDNSDV
KDFHRQVPDMAFKYPFELDSFQKRAILHLERHENVLVAAHTSAGKTVVAEYSIALAQKHM
RRAIYTSPIKALSNQKFRDFKNTFPEVGLLTGDVQIKPESSCLIMTTEILRSMLYNGSDV
IRDVEWVIFDEIHYINDIDRGVVWEEVLIMLPSHVGIILLSATVPNTLEFASWIGKTKKK
EVYVVQTKKRPVPLEHYLYTGNSNKTSNELFCILDQKGKFIIEGYRAAVQAKKERASKAD
ENYGPKGIRQGNPKLDRNIWLSVVQMLKKKDQLPVVAFTLSKKKCDANADMVKSIDLVSS
TERSHITMFFNKSISKLKGDDQSLPQVLWMKELLKNGIGVHHSGVLPILKEVVEMLFQKS
LLKILFATETFAIGVNMPARTVVFDSTRKFDGNKFRELLSSEYIQMAGRAGRRGLDSTGM
VIMLCKGDVPETSDLHKMLLGTPTKLVSRFRLTYYMILNLLRVKQLTVQDMMKRSFAEFY
LQKDAPENEKKLEELRLQTKHLQEPNCALCSIDLKKYYLTWAEIFQLKKIVKSAIFSSPY
GIKCMTPGRVVVVSNGKHRNALGVVLMDGGLESKFSSSSSVKEPLQRVYTVLILCNKDHE
QETVVTTGEKSHKEMFLSNKLFLPQEQSGQIVEEIAVADIESIINRLLKIDFAKIIDNHK
KRLIPRFKNDPPSQSTIMAGQDLLNLAQEFQTSIPLINPVKDLNLNNIDFIENLKRLEKL
ESNMLTYSCLECTSFSEHFNLMRANMKVREDVSQLELRLSDESLELIEEYNQRIEVLKEL
NYVDKDKNLQHKGRVAFEVSTEGMMITELLINNILTELHPEEIVAVLSCFVFEQKNASPP
TLNDNLQKVVNLVKETAKRVAICQKQCGLDVTVEECVGELHFGLVEVIYEWARGMSFKEV
MNLTDVSEGNIVRCIQRLDETLRDVRKAAHVIGVETLCDKMEKGMSLIRRDIVFAASLYT
T
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggatgctcagctgcgggaaggtgaaaagaaacgtatagacgtttcaaaagtttcacca
gagctagattttgatgttattcaacttggcctgtctggtgatgtaaaactggtgacagga
acctcttcatctccaaggatactgcctaccaacacactcccacttggccttcctcctgtc
tatcctgatctaaaaagtgaaattgaagaattcttaatttcgccacaggatattcctatt
catgcatttcagacagcacagcaatactggcagcgtgaaaaagatttagaaagtttgatg
gatactaacctttctccatgcccaagtgaactagcaatggaacgtgatccgaaaacaggc
aaacttcaaagtcaccatgaggtattcaaaggagaagttggacttaatgcacaaaattcc
atgtcattgaagcgtaaacctggagcttttacagattctgtaaaaggagaatcttccaac
tgccctttctggccaggtggaatggacttgccaactctggagaagtttaccaaatcaaat
atcaaggatgatgttttagaattatccaaagataagttactaatccgtcctcctggtttt
gattttgatgttacattgaataatgaaatttattcattgcctgggttatcatcgggttct
gacaagcaaactattagtattaccgatattctgtcagttgacatggatttagcagcattg
tacattgatgtctccgaaaaagacattgctgtcactcaacaagaaagtcctgtagatgtt
actttctcagtaaaagaagaaattccagaccagatattgcaggtgaatgagccagagggt
tcattaaaacctaaagcaaacgagaagaaacaatgggctattctggacaattcagatgtg
aaagattttcatcgtcaagttcctgatatggccttcaagtatccttttgaattggatagc
tttcaaaaacgagctattctccatcttgaaagacatgaaaatgttcttgttgctgcccac
acttctgctgggaaaactgttgttgcagaatattctattgctttggcgcaaaagcacatg
agaagggctatttatacttcccctattaaagctctttctaatcaaaagttccgagatttt
aaaaatactttccctgaagttggcttattaactggtgatgtgcagatcaaacctgaatca
tcttgcctaatcatgacaactgaaatattacgatcgatgttatacaatggttcagatgtt
attcgtgatgtagaatgggtcatattcgatgaaattcattatataaatgatattgataga
ggtgtcgtttgggaagaggttttgatcatgcttccctcccacgtgggaattattttattg
tcagcaacagttccaaacacactggagtttgcatcgtggattggaaaaacaaaaaagaag
gaagtatacgtagtgcagacaaagaaacgccccgttcctttagagcattacttgtacacc
ggtaacagcaacaaaacatcaaatgagctcttttgcatcttggatcaaaaagggaaattt
attattgaaggctacagagcagctgtccaagccaaaaaggaacgagcaagtaaggctgat
gagaattatggaccaaaaggtattcgacaaggaaatcctaaattggaccgtaatatttgg
ttgtctgttgttcaaatgttaaaaaagaaggaccagttgccagtagttgcttttacactg
tcgaaaaagaaatgtgatgcaaatgctgacatggtcaaaagtatagatcttgtatcgtca
acagaacgaagtcatataacaatgttcttcaataaatctatatcaaaattgaagggagat
gatcaatcattaccccaggtattgtggatgaaagaactgttgaagaatggaatcggagtt
catcacagtggtgtattacctattcttaaagaagttgttgagatgttgtttcaaaaaagt
cttctaaagattttatttgccacagaaactttcgccataggcgttaacatgcccgcccga
actgttgtatttgactcaacacggaaattcgatggtaacaaatttcgtgagctcctctca
agtgaatacattcagatggctggtcgtgcaggccgacgcggtctagatagtactggcatg
gtgatcatgctatgcaaaggagatgttcctgaaacttcagatttgcataaaatgttgcta
ggcacacccaccaaactggtctcgagatttcgtcttacttactacatgatattaaactta
ctgcgagtgaaacagctcacagtacaggacatgatgaaacgaagttttgcagagttctac
cttcagaaggatgcacctgaaaacgagaaaaaattggaagagttgcgactacaaacgaaa
catttgcaagagccgaactgtgcgctgtgttcaattgacctcaaaaagtactatttgacg
tgggcagaaatttttcaactcaaaaaaattgtgaagtccgccatcttttcttcaccatat
ggcattaaatgcatgacgccagggcgtgttgtggttgtgtcgaatggaaaacatcgcaac
gctttgggtgttgtcttaatggatggaggtctggaaagcaagttctcttcgtcttcttct
gttaaagaacctcttcagagagtttacactgtgttaattctttgtaataaagatcatgaa
caggagacagtcgtaacgactggcgaaaaaagtcataaagaaatgtttttatcaaataaa
ttatttctacctcaagagcaaagtggacaaattgtagaagagattgcagttgcagatatt
gaaagtattattaacaggttattgaaaatcgactttgcaaaaattatagacaatcataaa
aaaaggctcataccaagattcaagaatgatccgccgtctcagtctaccattatggctggt
caagatttactgaacttggcccaagaatttcagacctctatacctttaataaatccagtg
aaagacttaaatttaaataacatagattttatagaaaatttaaaacgtttggaaaagtta
gaatcaaatatgctcacgtattcgtgtttggaatgtaccagtttttcggagcatttcaac
ttaatgcgtgctaacatgaaagttcgcgaggatgtgtcacaattagaattgcgtttatca
gacgaaagtctggaactgatagaagaatataaccagaggatcgaggtattaaaagaattg
aattacgtcgacaaggataaaaaccttcaacacaaaggtcgtgtcgcgtttgaagtgagc
actgaaggaatgatgatcacagaacttcttatcaacaacattctaacggaacttcatcct
gaagaaattgtagctgttttgtcctgctttgtcttcgaacagaaaaatgcttcaccgcct
actttgaacgacaacttgcaaaaggtggttaatttagtaaaggaaactgcaaagcgagtc
gcaatatgccagaaacaatgtggtttagatgtcaccgtggaggagtgtgtaggagagcta
cattttggtttagtggaagtgatttatgagtgggctcggggaatgtcttttaaagaagtg
atgaacttgactgatgtatccgaaggtaatattgttcgatgcatccaaagacttgacgaa
acacttcgcgacgttcgtaaagctgcgcatgttattggtgtggaaacactttgtgataaa
atggaaaagggaatgagtttgatcaggcgtgatatcgtttttgctgccagtttatacacc
acgtga
DBGET
integrated database retrieval system
