Hydractinia symbiolongicarpus: 130612429
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Entry
130612429 CDS
T09218
Name
(RefSeq) nuclear pore complex protein Nup50-like
KO
K14295
nuclear pore complex protein Nup50
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130612429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130612429
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130612429
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP50
RM3_Med14
LRR19-TM
Motif
Other DBs
NCBI-GeneID:
130612429
NCBI-ProteinID:
XP_057289716
LinkDB
All DBs
Position
10:11399775..11406191
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AA seq
419 aa
AA seq
DB search
MAAKKGKRTADTYLTDQNWDKEDTKSDEEEETGTFKEASEDVLAKRVFKKAKRRVGSDNT
CDTSTKSNPFGGFGGFSTFSAKPPASTVASITKATVTISDQKSNFWSNTNENKDFFASRD
EPTTKIDSSNTKKDNLTKADNSASKMTSTNTTEDNDVYFEQLASLNHCVLSWIKQHVDKN
PCIDLTPVFNDYQKHLKELESKYSPKTKKNIVALDTNANVFKTPDSRNASPITSVAASTK
MMTMFTSSTPIQKNSAIPAATNFGTNNLLFATSSLVTKTEEKQNTENNENEEDTNLEPER
KTIVEDDAFYQIRCKLFFKKGANWQELGIGMLYLKPCGEKTQLLIRMETTTGKVLLNINL
AEDMPISRSGKNNVMLVSVPNPPVFTKPADGDNSIPCTYLIRVKGATEADELLSKMKPT
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaaaaaaggtaaaagaacagcagacacttatctcactgatcagaattgggac
aaagaagatacaaaaagcgacgaagaagaagagactggtactttcaaagaagctagtgaa
gacgtattggcgaaaagagtttttaaaaaggcaaagagaagagttggatcagataacact
tgtgatacttcaacaaagtcgaatccttttggtggttttggtggcttttctacattttca
gcgaaaccacctgcttctactgttgctagtataacaaaagcaaccgtaactatttccgat
cagaagtctaatttttggtccaatacaaatgaaaacaaagatttctttgcaagccgtgac
gagccaacaacgaaaatagattcttcgaataccaagaaagacaatctaactaaagctgat
aactcagcgtctaaaatgaccagtacgaatactactgaggataatgatgtctattttgag
cagttagcatcactcaaccattgtgtattgtcgtggatcaaacaacacgtggacaagaac
ccgtgtattgatttaacgcctgtgtttaatgattaccaaaaacatttgaaagagctagag
tcaaaatactcgccgaagacaaagaagaatattgttgctctagatacgaacgcaaatgta
tttaaaacaccagacagtaggaatgcatcgcctattacaagtgttgctgcttctactaaa
atgatgacaatgtttacttcatcgacacctattcaaaaaaacagtgctatccctgcagcg
acaaattttgggacgaataatttgttatttgccacgtcatcacttgtaacaaagacggaa
gaaaaacaaaacacagaaaataacgaaaacgaagaagatacaaatctagaaccagaacga
aaaactattgtagaagacgatgcattttatcaaattcgttgcaaactattctttaaaaaa
ggcgccaattggcaagagcttggtattggcatgttatatctcaaaccgtgcggtgagaaa
actcagttactgatccgaatggagacgactacaggaaaagttttactaaacattaacttg
gctgaagatatgcccatttctagaagtggcaagaacaacgtaatgttggtttcagttcct
aatccacccgttttcacgaaacctgcagacggagataatagcataccatgtacttatttg
attagggtgaaaggagcaactgaagctgacgaacttttatcaaaaatgaaacctacatga
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