Hydractinia symbiolongicarpus: 130613050
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Entry
130613050 CDS
T09218
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130613050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsy04131
]
130613050
Membrane trafficking [BR:
hsy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130613050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
TPR_Vps41
TPR_VPS8_2
zf_RING_Vps8
WD40_CDC20-Fz
zf-RING_Vps41
zf_RING_Vps8_fungal
Beta-prop_HPS5
zf-RING_UBOX
zf-RING_2
zf-RING_5
EIF3I
zf-RING_11
zf-C3H2C3
ANAPC4_WD40
Gluconate_2-dh3
zf-C2HC_2
Beta-prop_EML
Prok-RING_1
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
130613050
NCBI-ProteinID:
XP_057290351
LinkDB
All DBs
Position
10:8311406..8324275
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AA seq
1437 aa
AA seq
DB search
MAERTAAEYQQHFMPQNPVLADLLAATDRVDSMESLDATENQTGPNKTESFKFLENEFGF
PDFPQGDLPSLESILQEPDADIYNFEDLNSVIGDVKTDDGTVSIMSEMLPLPTTNLTELL
KPKKPNAHGSVLRHVILKKISSQMIDACNRRDAGLPTAMAVSNMVAVGTSHGLVLVFEPK
DQVLKLVLGATSDGDKYGAVTALGINVDCSRLLCGYARGQITMWDLNNGNCLRVITEAHP
TGFAVLHIQFTDDPTIAMLNDSSGSVYTLSFKRLITRTCESTCFFSGSKGEVCTMVPLHI
SPNLKDSPLYHSSLLAMASLTKLIIVNMKPKPTAVFTKKLSGPQDCLPLLGWHFTMVEDK
QVVPVLAFARNQTILFYQVWKVDEEYQFILFQTIKTRYTLVAMNCFNSQIIVTIDTFERI
RTIDVRSKEELECLDLGSVQLVYGSSYFKSLSTGGNVSCALKAASEHACYQSVQVFNGQL
ILLGTKSLHCLTLRHWKDRLEFFLKRNEFIESLALAKLFYEEKAKAVVGLTGSRKSRKAQ
IAEEISGILLSYLDVSMAVNCPKTNDETILAPYFRSLVPASIENCLLINDLDLLFTEVYD
RFADDDVAKKEFLEALEMYILDDKLTSLAPVVMRDLIEHYESTAQLHKLEACLVHLDLFS
VDIDYMVKLCWAHRLYDLVIYVFNKGLHDYLTPLEKLIKILSNALKENNGVLSDDDLALG
CKILVYLSCCLAGNQYPLGVIDKNCAKEVKDDIFNSIIIKRSEHASYSETYPHVRCLLMF
DTREFLNVLSIAFEEKEFEPKSEEEAVGAPSKRQKVVDVLLQVMVNDQSFSPAQVGCLFT
FIARQMAKHEGTIQVNKLLFEQVLEYLTNPDEERRHEEREQALLELLAAGGLRQFPDERV
LALAESAKFYRVCEIIYQQKRQYEKVLSCYWRDMARKTQAFSYIDQMLSDDSFTDFEKEE
FATAVLKCMDRLVEINSMKFARLIINHFPASFNEVAGKLQYQPEIQYAFLKGVFHVKTDA
RNEKQKRIMQIDPEIHDQFIELMCKFEPESVHRYLQGNDEYRLEQALAIVQPKELVHATA
YLLERMGDVMSAFYLLCNELQAKVDTLNRTYLELPDVEEMTDDLSDALKGAGRSLQNVMH
LCQRNSQRLEREDREALWFPLLETVMAPQRKIKNTSSSHFLVFKEFTKDVLINMMAYISL
PAVLQKIMQDPTYSSGKFGEIKELILGMLDTYNYELTLLETTNKLLGKDLHGQYYQEKQY
LSRGFRPSLNRCCLCSRSFNMESVISADEMVLFRCGHSYHRQCLQGSVGFDEELVCVQCN
KTNVIYTGGYRRGNSRIENGKTAVKKTKPKNEIFKVSLTMQQEAALNGLSNHGNKLSKVA
ILSDLNGDNFADWASHNSSRALSNVIPRSFLQNQTGITVDEKFSLRLSPPPRKNTLY
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagaactgctgcagaatatcaacaacattttatgccacaaaatcctgtgttg
gctgaccttcttgcagctacggatcgcgttgattccatggagtcattggatgcaactgaa
aatcaaactggcccgaacaaaacagaatcgtttaaattccttgaaaatgaatttggcttt
ccagattttccgcagggagacttacccagccttgagagcattctacaagaaccagatgca
gacatctacaattttgaagatcttaattctgttattggagatgtcaaaacagatgatggc
actgtgagtattatgagtgaaatgttaccactgcctaccactaatcttactgaattgttg
aaaccaaagaaaccaaatgcacatggttctgttcttcgccacgtgatcttgaaaaagata
tcttctcaaatgatagatgcttgtaacagaagggatgctggtctgccaacagctatggca
gtgtctaacatggtagctgttgggacttcgcacggtttggtactcgtttttgaaccaaaa
gatcaagttttaaagttagtgcttggtgcaacgtcagatggagataagtatggtgctgtg
acagcgttaggcataaacgtggattgtagtcgcttgttgtgtggctacgcacgtggtcaa
atcactatgtgggatttaaataacggcaattgtttgcgtgtgatcacggaagctcaccca
acaggctttgctgtgctacacattcaatttacagatgacccaaccatcgccatgttgaat
gatagcagtggctctgtttacacgttgagctttaaaagattgatcacaagaacgtgtgaa
tctacttgtttcttttccggaagcaaaggagaagtgtgcaccatggttcccctacatatc
agtccaaacttgaaagacagcccattgtatcattcttctttacttgccatggcctcacta
actaaacttatcattgtgaatatgaaacctaaaccaacggctgtgtttactaagaagttg
tctggtccccaagactgtttaccactcctgggctggcattttacaatggtggaagacaaa
caagttgtgcctgttttagcttttgctcgcaaccaaactattttgttttatcaagtgtgg
aaggttgacgaagaataccaatttattctcttccaaactatcaaaacgcgttatacactc
gttgcgatgaattgtttcaactcacaaattatagtaacgatcgatacgtttgaacgcata
cgtactattgacgtgcgaagcaaggaagagctggagtgtttagatttgggatcagtacaa
ctcgtgtacggaagtagttacttcaagtctctctctacaggtggtaacgtgagttgcgcg
ctgaaagctgctagcgagcatgcctgttaccaatccgtacaagtttttaacggacaatta
atattgttagggacgaagtcgctgcactgtttaacgttacgtcattggaaagatcgattg
gaatttttcctcaaacgaaacgaatttattgaaagtttagcgctagcgaagttgttttat
gaagagaaagcaaaagctgttgttggattaacgggttcgcggaaaagtagaaaagcgcaa
attgctgaagaaatatctggtatactattgtcgtatttagacgtatctatggccgtaaac
tgcccgaaaacaaacgacgaaacaattttagcgccgtattttcgaagtttagtacctgca
agtatcgaaaattgtttgctgataaacgatctggatttactttttacggaagtgtacgat
cgatttgccgacgatgatgtagcgaaaaaagaattcttagaagctttggagatgtatata
cttgatgataagttgacgtctttggcacctgtcgtcatgcgagacctcatcgagcattac
gagtctactgcgcaacttcacaagcttgaagcgtgtctagtgcatctcgatctgttttcg
gttgatatcgattacatggtgaagttatgctgggcccatcgtttgtacgatctagtcata
tacgtgtttaacaaagggttacacgactatctcacaccgttagaaaaactgattaaaatt
ttaagtaatgctttgaaggagaacaatggagtgttgagtgatgacgatttagcattaggt
tgcaagattttagtgtatctaagctgctgtttggctggtaaccaatatcctctgggtgtt
atagataaaaactgcgccaaggaggtaaaggatgatatctttaactcgatcatcataaaa
aggtctgaacatgctagctattcagagacttacccccatgttagatgtttgttgatgttt
gatacgagagagtttcttaacgttttgtctatcgcgtttgaggagaaagagtttgagcca
aaaagtgaagaagaagctgtcggcgcgccgtcgaaacgacagaaagttgtcgatgtcttg
ctgcaagtcatggttaacgatcaatcattctcacctgcccaagtcggctgcctttttacg
tttattgctcgccaaatggcgaaacatgaaggtaccatacaagttaataagttattattt
gagcaagtcttagagtatttaaccaatcctgacgaggaacggcgtcacgaagaacgagaa
caagcgttgttggaactacttgcagcaggtggcttgcgtcagtttcccgacgaaagagtg
ctggctcttgctgaatcagcaaaattttaccgtgtttgtgaaatcatataccagcaaaaa
cgtcagtacgagaaagttctgtcgtgttattggcgcgacatggcccggaagacgcaagct
ttttcttacatcgaccaaatgctctctgacgattctttcaccgactttgagaaagaagaa
tttgcgaccgctgtattgaaatgcatggataggttggttgaaatcaacagcatgaaattc
gcacgtttaattatcaatcattttccagcttcgtttaacgaagtggctggcaagttgcag
taccaaccagaaatccagtacgcctttttgaaaggtgttttccatgtcaagacagacgct
aggaatgaaaaacaaaagagaataatgcagatcgacccggaaatacacgaccagtttatc
gagttgatgtgtaaattcgaaccggaatcagtgcatcgttatttgcagggaaacgatgag
tatcgcttggagcaagctttagctatcgtgcaaccgaaagaacttgttcacgctacagca
tatcttcttgaacgaatgggcgatgtaatgagtgcgttttacttgctatgcaacgaactt
caagcgaaagtcgatacgttaaatcgaacttacttggaattgcccgatgtcgaagaaatg
acggatgatttgagtgacgcgctaaagggtgccgggagatcgttacaaaacgttatgcat
ttatgtcaaagaaattcacaacgtttggagagagaggacagggaagccttgtggtttcca
ttactagagacagtaatggcgcctcaaagaaaaataaagaacacctcctctagtcatttt
ctggtgtttaaagaatttactaaagatgtacttattaacatgatggcgtatatatcctta
cctgctgtcctacaaaaaatcatgcaagatcccacctacagttctggaaagttcggagaa
atcaaagaactcattcttggaatgttagatacgtacaactacgagcttacgttactcgaa
accacaaacaagttgctgggaaaggacttgcatggtcagtattaccaagagaaacaatac
ctttcgcgtggttttcggccttcattgaatcgatgttgcttatgttcgcgttcgtttaat
atggaaagtgtgatcagtgccgatgaaatggtactgtttcgttgtggtcattcttaccac
aggcaatgtttgcaaggatctgttggttttgacgaggagctggtgtgtgtgcaatgcaac
aaaacgaatgtaatctatacgggtggttatcgtcgcggtaatagcagaatagagaacgga
aaaacagcggtaaagaagaccaaaccaaaaaacgagatttttaaagtaagtctgaccatg
caacaggaggctgctctaaatggtttatcaaaccacggaaacaaactttcgaaagtagct
atactgtcagatttaaatggcgataattttgcagactgggcttcccataattcatcgcgg
gcgttaagcaatgtgattccacgctcttttcttcaaaatcaaacgggtattacggtggac
gaaaagttttccttgcgtttatctccacctccaagaaaaaatactttgtattaa
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integrated database retrieval system
