Hydractinia symbiolongicarpus: 130613786
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Entry
130613786 CDS
T09218
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130613786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsy03041
]
130613786
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130613786
Spliceosome [BR:
hsy03041
]
Complex C
Other components
Step II factors
130613786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
SRP54
ABC_tran
AAA_14
AAA_16
AAA_23
AAA_30
cobW
Motif
Other DBs
NCBI-GeneID:
130613786
NCBI-ProteinID:
XP_057291109
LinkDB
All DBs
Position
11:complement(10139890..10160846)
Genome browser
AA seq
1193 aa
AA seq
DB search
MTSDAPKRLEGSDGGEGGLVIKKKKSSTDDHVFKKPIGSVLGLQKLAEQKRRQLKAVKKR
HDSSDSDSSSEDEEQYSERKDKHYRSYRPETPSNPGGVSESAREKIKRRKERDKEERRTG
IYAESDKKKSKYEHRETSREKRYKSSRKDKHSAKSSSRRYAEWEDTPTSRDSVNERRTTP
RSKFELDTPSRSNWDGDNSVKYNKSEWDMPSPARSKHGSYSERSYRNSTRTERSRYTKSH
RQREDETPRFTPTHKYNDWADDRRKGGWTPSERGTPRRPNEGSSEDREEWENEQKNLDRA
WYDLDAGYDENTNPFANVSEEYVKKKEDLLKKQNAKKRSARARQVQKDNDMWENNRLLTS
GVVTRTEVDDDFDESDEAKVHLLVHNIVPPFLDGRIIFTKQPEPVIPIKDPTSDMATIAR
KGCHSVRLQREKKEALKAQKKEWELAGTNIGNIMGVKKKEEKDDDDGSDYKKSHQFADVM
SGKSEASSDFARRKTLKEQREYLPIFAARSELLTIIRDNPVVVIVGETGSGKTTQLTQFL
HEEGYSKNGLIGCTQPRRVAAMSVAKRVSEEMDVNLGEDVGYAIRFEDVTSEQTVIKYMT
DGILLRESLGGSDLDNYSCIIMDEAHERSLNTDVLFGLLREVVARRNDLKLIVTSATMDS
TKFANFFGNVPIYQIPGRTFPVDVLYSKTVLDDYVDAAVKQSLQVHLMPAEGDILVFMPG
QEDIEVTCDLISERLAEIEEVPPLAVLPIYSQLPSDLQAKIFEKAPDGVRKCVVATNIAE
TSLTVDGIRFVVDCGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQAFRLY
TESQYRNELLVSTVPEIQRTNLANVVLLLKSLNVEDLLEFHFMDPPPQDNILQSMYQLWI
LGAIDNTGALTKMGRKMVEFPLDPALSKMMIVASEMDCCDEVLTIVSMLSVPSIFSRPRG
REEDSDAAREKFQVPESDHLSYLHVYQQWKSNGYSSTWCKEHFIHPKAMKKVREVRAQLK
DIAKALKMPIKSCGFDHDVVRKTICSAYFHQAARLKGVGEYANCRTGMPCNLHPSSALYG
MGYSPDYVVYHELIMTSREFMQCVTAVDGHWLAELGPMFFSVKESGLSRTEKRQQELEEK
RRMENQMKEASEIIKARKEEKLSRMTPATRTPIATPGRQQIATPKRTPSRFGL
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgacttcagatgcacccaaacgcttagaaggaagcgatggtggtgagggtggattggtc
attaaaaagaagaagtctagtacagatgatcatgtttttaagaaacctattggaagtgtt
ctaggtctgcaaaaactagctgagcaaaaacggcgacaattgaaggccgttaaaaaaaga
catgatagcagtgatagtgatagcagtagtgaagatgaggagcagtactctgagagaaaa
gataaacattatcgctcatatcgtcctgagacaccctccaatcctggaggtgtgagcgaa
agcgcaagggagaaaattaagcgtcgaaaagagagagataaagaagaaagaagaacaggc
atatatgcagagagtgataaaaagaaatcaaagtatgaacatagagaaacaagtagagaa
aaaagatataaaagtagtcgcaaagacaagcattctgcaaagtcttcatcaagaagatat
gcagaatgggaagatactccaacttcaagagattcagtaaatgaaagaagaacaactcca
agatcaaaatttgaacttgacacaccctctcggagcaattgggatggtgataatagtgtt
aaatacaataaatcagaatgggacatgccatcaccagctcgatctaagcatggaagttac
agtgagagaagttatcgcaattcaacaagaaccgaaaggagccgatacacaaagtcgcat
cgtcaacgcgaagatgaaactcccaggtttacgccaacacataagtataatgattgggca
gatgatagaagaaaaggtggatggacaccaagtgaacgaggcactccaagaaggcctaat
gaaggttcgtcagaagaccgtgaagaatgggaaaacgagcaaaagaatttagatcgagca
tggtatgacttggatgcgggctatgatgaaaacacaaatccctttgcaaatgtttcagaa
gagtatgtaaaaaagaaagaagatctactgaaaaaacaaaatgcaaaaaaacgttctgca
agagccagacaagtccaaaaggataatgacatgtgggaaaacaacaggttattgacaagt
ggtgtagtaacccggacagaagttgacgatgactttgatgaatcagatgaagccaaagtt
catttgcttgtacataacatagttccgccatttctcgatggaagaattatctttacaaaa
caacctgaaccagtgattcctataaaagatccaacaagtgacatggcaacaattgcaaga
aaaggttgtcattctgtacgactccagcgtgaaaagaaggaagccttaaaagcacagaaa
aaagaatgggaactagcaggaacaaacattggtaatataatgggtgtcaaaaagaaagaa
gagaaggatgatgatgacggttccgattataaaaaaagtcatcaatttgctgacgtaatg
tcaggcaaatccgaagcatcaagcgattttgctcgaaggaaaacattgaaagaacaaagg
gaatatctgcctatatttgcagctcgatctgaactacttaccataattcgagacaaccct
gtagttgttattgttggagagactggatcaggaaaaacaacacagttaacacagttttta
catgaagaaggttactcaaaaaatggactaattggctgtacacaacctcgtcgtgtggct
gcaatgtctgttgcaaaacgtgtcagtgaagagatggacgtgaaccttggcgaagatgtt
ggatatgcaatccgttttgaggatgtcaccagcgagcaaacagtaataaagtatatgaca
gatggtatcttacttcgagaatcgcttggtggttcggatcttgataactacagctgtatt
attatggatgaagcccatgagcgttcactaaatactgacgtcttgtttgggttgctaaga
gaggttgttgctcgacgaaacgatttaaaactaattgtcacctctgctaccatggattct
actaaatttgctaatttttttggaaatgttcctatatatcaaattcccggacgtacattt
cctgttgatgttttgtatagtaagacagtattggatgattacgttgatgctgctgtgaaa
caatcattgcaagttcatctgatgccagcggaaggtgatattctagtgtttatgcctgga
caggaagatattgaagtcacatgtgatttaatatctgaacgacttgcagaaatagaagaa
gtgccaccgctagctgttttaccgatatactctcagttgccttctgacttgcaagcgaaa
attttcgaaaaagctccagatggagtacggaagtgtgttgtggcgacaaacattgcagaa
acttctttaacagttgatggaattcgctttgttgtagactgtggatattgtaaattaaaa
gtatttaacccaagaataggtatggatgcattacaagtgtatcctataagtcaagcaaat
gcaaaccaacgttcgggtcgtgctggtagaacaggaccagggcaggcatttcgtctttac
accgaaagtcagtatagaaatgaattattagtttcaactgtgccagaaattcaaaggacc
aatctagctaatgttgtcttattactaaagtcattgaatgttgaagatttacttgagttt
cattttatggaccctcctccacaggacaacatattgcaatccatgtatcagttgtggata
cttggtgcaatagacaacactggggcgcttacgaagatgggaagaaaaatggtagagttt
cctttagaccctgcgctttctaaaatgatgattgttgcatctgaaatggactgctgtgat
gaagtgttgactattgtttccatgttatcagtaccgtcgattttctctcgaccacgtggt
cgcgaggaagatagtgacgcggcacgagagaagtttcaagtacctgagagtgaccacttg
tcgtatttacacgtgtaccagcagtggaagtcaaatgggtattcctcgacttggtgcaaa
gagcatttcatacatcctaaagcaatgaaaaaggtccgtgaagtacgtgctcagttgaag
gacattgcaaaggctttaaaaatgccgatcaaatcatgtggttttgatcacgatgttgtt
cgaaaaacaatctgttctgcatattttcatcaagctgcaaggctaaagggagttggcgaa
tacgcaaattgccgaacaggaatgccgtgcaatttacatccaagtagcgcattatatggt
atgggttattcgcccgattatgtggtttatcatgaactcatcatgacttcacgggaattc
atgcaatgtgtcactgcggtggatggccattggttggcagagcttggccccatgtttttt
tctgtgaaagaatctggattatcgagaactgaaaaacgacaacaagaactggaagaaaaa
cgtaggatggagaatcaaatgaaagaagcgagcgagattatcaaagctcgaaaagaagaa
aaattatctagaatgactcctgcaacaaggacacctattgctacgcctggccgccagcag
attgccacacccaagagaactccctcgagatttggattatag
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integrated database retrieval system
