Hydractinia symbiolongicarpus: 130614029
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Entry
130614029 CDS
T09218
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
hsy
Hydractinia symbiolongicarpus
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsy03041
]
130614029
03016 Transfer RNA biogenesis [BR:
hsy03016
]
130614029
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130614029
Spliceosome [BR:
hsy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130614029
Transfer RNA biogenesis [BR:
hsy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130614029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
PFK
Motif
Other DBs
NCBI-GeneID:
130614029
NCBI-ProteinID:
XP_057291400
LinkDB
All DBs
Position
11:complement(8213785..8251402)
Genome browser
AA seq
723 aa
AA seq
DB search
MAGHFSEFGMLPEVVKGIEDIGWLLPTDIQAEAIPLILGGGDVLMAAETGSGKTGAFCLP
VIQIVYENLVTFKGGKKSTNVNTKGKWEMSKFDRDPSFAISEDGLLCQAREQKQWQGARS
NYGVSKGNYYYEATVTDEGLCRIGFSTDSAVLDVGIDGESYGFGGTGKKSHKKQFDTYGK
PFGKDDVLGCYLNLEFGTIKYSKNGQDFGRAFVIDENLYERAFFASVTLKNAELKFNFGD
TPFAYPPSSDYVGLSQAKDKVVSKKLSGPTKFTNICSPAALIMEPSRELATQTHDQISLF
KKYMPDPKLKNVVLVGGQNSREQLYQLEKGVDIVTGTPGKIDDFVSTGKLKLDQVRFLVF
DEVDGLLAQNQGKLIETLYQQCPKMSSDGKRLQLVVCSATLHNFDVKKLAQKIMHYPTWI
DLKGQDSVPDTVHHVVCHVDPKEDTAWHFLKPKIRTDAVHAKDDTHPSSGSAESFSEGVK
ILKGEYVIKAIRHHKMDQGIIFCRTKLDCDNLERYLNSRSNGNELSCVCLHGDRNPKERT
GNLEAFKNKSARFLICTDVAARGLDIKGVPFVINVTLPDEKANYVHRIGRVGRADRMGLA
LSLVSTCREKVWYHKCESRGRNCNNTRLLDKGGCTIWYDEKRYYAEIEEHLGETISQVKR
DMVVPVNEFDGKVVYGEKRKQRGSNFSYHTAELQPAVKELAALEKQVQLSYLQFVQDWHL
ATS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggctggtcacttttcagaatttggtatgttgccagaagttgtgaagggcatcgaagat
attggttggttgcttccaacagatattcaagcagaagccatccctttaatacttggtggt
ggcgatgttttaatggctgcagaaactggaagtggcaaaacaggagcattttgtttacca
gttattcaaattgtttatgagaatcttgttacatttaaaggtggaaagaaaagcacgaat
gtcaatactaaaggaaaatgggaaatgagtaaatttgatagagacccctcttttgcaata
tctgaagatggattgttatgtcaagcacgagagcagaaacaatggcaaggtgctcgttcg
aactatggtgtttcaaaagggaattattactatgaagcaactgttacagatgaagggctg
tgtcgtattggattttcaacagattctgcagtgttagatgttggaattgatggtgaaagt
tatgggtttggtggaaccggcaaaaaatctcataagaagcaatttgatacctacggaaag
ccatttggtaaagatgatgtccttggctgctacttaaaccttgaatttggaactataaaa
tatagcaagaatggtcaggactttggtcgagcatttgtaattgatgaaaatttgtatgaa
cgagctttttttgcttcagtgactttaaagaatgcagaattgaaattcaattttggtgat
acgccatttgcgtatcctccctcatcagattatgttggtttatcacaagcaaaggataag
gtggtctcaaagaaattgtccggaccaaccaaatttacaaatatctgttcaccagctgct
ttaattatggagccctcaagagaacttgcaacacagacacatgaccagatatcactcttc
aagaaatatatgcctgatccaaagctcaagaatgtggttttagttggaggacaaaattca
agagagcaactttaccagctggagaaaggagtagatatagtgacgggcacacctggtaaa
attgatgattttgtcagcaccggaaagttgaagctggatcaagttcgattcctagtgttt
gatgaagtggatggcttactggcacaaaatcagggcaagttaattgagactttgtatcaa
caatgtcctaaaatgtcttcagatggaaagagattacagttggttgtatgcagtgctacc
ttacataactttgacgtcaaaaagcttgctcaaaaaattatgcattatccaacgtggatt
gatctgaaaggacaggactcagtaccagacacggtacatcatgtggtttgtcatgtagat
ccaaaggaagacacagcatggcatttcttaaaaccaaaaattaggacagacgctgttcat
gctaaagacgatacacacccttcatccggttctgcagagtcgttttctgaaggcgtgaaa
atcttaaaaggagaatatgtgattaaagctattcggcaccataagatggatcaaggcatt
atattttgccggacaaaattagactgtgataatttagaacggtacttgaattcacggagc
aatggcaacgaactttcatgtgtctgtttacacggtgatcgaaacccgaaagaaagaacg
ggaaacttagaggcatttaaaaacaaatcagctaggtttttgatttgcacagatgtggct
gctagaggtttggatataaaaggagttccatttgttattaacgttacgcttccggatgaa
aaggccaactacgtgcatcgaattggccgtgttggccgagcagacaggatgggtttagcg
ctatcactcgtttctacatgtagagaaaaggtttggtatcataaatgtgaaagtcgtgga
cggaattgcaacaacacaagattactagataagggaggctgcacaatttggtacgatgaa
aaacggtattatgcggagatagaagaacacctgggtgaaacaatttctcaagttaaacgg
gacatggtcgtgcctgtaaacgagtttgatggaaaagtagtgtacggagagaaaagaaaa
caaaggggtagcaattttagttatcacacagcggaattacaaccagcagttaaagaatta
gcagcgcttgaaaaacaagtacagctttcctacttgcagtttgttcaagattggcatctc
gctacaagctga
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