Hydractinia symbiolongicarpus: 130614229
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Entry
130614229 CDS
T09218
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130614229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsy03021
]
130614229
03041 Spliceosome [BR:
hsy03041
]
130614229
03036 Chromosome and associated proteins [BR:
hsy03036
]
130614229
Transcription machinery [BR:
hsy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130614229
Spliceosome [BR:
hsy03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130614229
Complex B
130614229
Complex C
U2 SnRNP specific factors
130614229
Chromosome and associated proteins [BR:
hsy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130614229
TFTC complex
130614229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
130614229
NCBI-ProteinID:
XP_057291635
LinkDB
All DBs
Position
11:21946856..21963066
Genome browser
AA seq
1223 aa
AA seq
DB search
MHLYQLTLQKSSAIYNAVHGNFSGTKLQEIAVSRGKVLELLRPDPNTGKVHPLFATEIFG
VIRDLMAFRLTGGTKDYLAVGSDSGRIVILEYLPAKNCFEKVHQETFGKSGCRRIVPGQY
LAADPKGRAIMIGAVEKQKFVYILNRDAQARLTISSPLDAHKSHNIVFHTVGIDVGFENP
MFACLELDYEEADVDHTGEAAQAAQQTLTFYELDLGLNHVVRKYSEPLEEFANLLISVPG
GNDGPSGVLVCSENYLTYKNFGDQQDIRCPIPRRKNDLDDNERSMIFVCSATYKTKSMFF
FLVQSEQGDIFKVTLETDEDMVTEIRIKYFDTIPVSSALCVLKTGFLFSASEFGNHALYQ
ITHLGDDDEEPEFSSVMASELDEGETFFFHARDLQNLVLVDEMESLAPIMHCQVADLANE
DTPQLYAACGRGPRSSLRVLRHGLEVSEMAVSELPGNPTSVWTVKKNITDEQDSYIVVSF
VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALLQIYPDGIRHIRSDKRVNEWKT
PGKKSIIRSAVNERQIVIALTGNELVYFELDQSGQLNEYTERKEMSADVVCMALGPVPTG
EQRSRFLAVGLSDNTVRIISLDPNDCLEPLSMQALPAAGESLCIIEMGGAETGDKATTGN
VGGHFLNIGLSNGVLLRTVLDTVTGDLSDTRIRYLGSKPVKLFNVRTYGSSSVLAMSSRT
WLSYTYQSRFHLTPLSYESLEYASSFASEQCPEGIVAISANTLRILALEKLGAVFNQVTT
PLSYTPRKFTIDMKTSTLILIETDHNAMTKAAKADRKMALAQEMVDACGDNEAARAAESQ
VAANFLNTDMPEVQFGAPKAGLGKWASIIRVMDPIRGETYHEIQLEQDEAAFSVCVAEFL
TRPGERFVIVGCAYKMTLTPHNCLTASIHTYRMYQNDRGKIQLEFLHKTPVDDIPSAVTP
FQGRILVGVGRILRIYDMGKKKLLRKCENKKISSFINGIDTIGYRIIVHDIQDSFHFLKY
KRKENQLVLFADDVSTRFLTCGCLMDYDTMAGADKFGNVFFVRLPQDVKDDIEEDPTGVK
ALWDRGLLNGASQKADTVCIYHVGETILSLQKSTLIPGGSESLVYTTLSGGVGMLVPFTG
REDIDFFQHLEMHMRQENPPLCGRDHLWYRSSYAPLKNVVDGDLCEQFNSLEYSKRKTIA
EELDRTPAEVSKKLEDIRTRYAF
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgcacttataccaactcacactgcagaagtcatcagcaatttacaatgctgtccatggc
aacttttctggcactaaacttcaggaaatagctgtttctcgaggaaaggtattggagctt
ttacgacctgatccaaatactggtaaagttcatcctctgtttgccacagaaatatttgga
gttatacgtgacctaatggctttcagattgacaggaggaacgaaagattaccttgcagtt
ggttcagattctggacgaattgtcatcttggaatatcttccagcaaagaattgttttgaa
aaagtacatcaagaaacctttggaaaaagtggatgcaggaggattgtcccaggtcaatac
ctcgctgctgatccgaaaggtcgagctatcatgataggtgctgttgagaaacaaaaattt
gtttatattttaaatcgagatgcacaagcaaggttgactatttcttcacctcttgatgca
cacaaatcacacaacatcgtcttccacactgtgggtattgatgttggctttgaaaacccc
atgtttgcatgcctagagttggattacgaagaagcagatgtggaccatactggtgaagct
gcacaggctgcgcaacagacactaaccttctacgaacttgatcttggtttgaaccatgtt
gtcagaaaatatagtgaacctttggaagaatttgcaaatctgttaatttcagtacctggt
ggtaatgatggtccaagtggtgtcctagtctgttctgagaattatctaacctacaaaaat
tttggtgatcagcaagatataagatgcccaatcccaagaagaaagaacgacctggacgac
aatgagcgcagcatgatttttgtatgtagtgcaacatacaagacaaagtccatgttcttc
ttcttggtgcaatccgagcaaggcgatattttcaaagttactttagagacagacgaagat
atggtgacagaaatacgcattaaatatttcgacacaattccggtttcttctgcgttatgc
gttttgaagactggctttttgttcagtgcatcagagtttggtaaccatgctctgtatcag
attactcatcttggtgatgacgatgaagagccggagttttcttcggtaatggcatctgaa
ttggatgagggtgaaacatttttctttcacgcaagagatttacaaaacttggttttggtt
gatgaaatggaaagtcttgcgccaatcatgcattgtcaggttgccgatttggctaacgaa
gacactcctcaattgtatgcagcttgtggaagaggtccaaggtcatcgcttcgtgtctta
aggcatggtttggaggtgtctgaaatggcagtgtcagaattacctggaaatccaacaagt
gtatggacagtaaagaaaaatattacagacgagcaagattcttacattgttgtgtctttt
gtaaatgctacgttggtgttaagtattggtgaaacagtcgaagaggtgacagatagtggt
tttcttgggaccacgcctaccctctcgtgttcattactcggtgaagatgctttacttcag
atctatcctgatggaattcgtcatattcgttcggacaaaagagtaaacgaatggaaaaca
cctggaaagaagagcatcattcgcagtgcggtaaacgagcgacaaattgtcattgcatta
actggaaacgagcttgtttacttcgagctggatcagtctggtcaactgaacgagtacact
gagcgaaaagagatgagcgctgatgttgtttgcatggcgttagggccagtaccgacaggc
gaacaaagatcaaggtttttagctgttgggttgagtgacaacactgtcaggattatatca
ttagatccgaatgactgtctagaaccacttagtatgcaggctcttcctgcagctggtgaa
tcactttgcatcattgagatgggtggtgcagaaacaggcgacaaagcaacgactggtaat
gtgggcggccattttcttaatattggcttatcaaatggtgtcttgctgcgaacagtgtta
gatactgtgacgggtgatctttctgatacacgaatcaggtatttgggttcgaaacctgtg
aaattgtttaatgtaagaacttatggttcaagctcggttctagctatgtcgagccgaaca
tggttgagttacacctaccaatcccgttttcatctcactccactctcgtacgagtctctg
gaatacgcctcaagctttgcctcagagcaatgtccagagggtattgtggcaatttcagca
aacacgctaaggattttggcgttagagaagttgggcgcagtgtttaaccaagtaaccacg
cctttgagctatacaccgcgaaaattcactatcgacatgaagacaagcacgttaatatta
atcgaaaccgaccacaacgctatgacaaaagctgcgaaagctgaccgaaagatggcctta
gctcaggaaatggtggatgcttgtggtgataacgaggccgcgcgggctgcagaatcgcaa
gtggctgcaaatttcttgaacactgacatgcctgaggtgcaatttggtgcacccaaagct
ggcctcgggaagtgggcgtctatcattcgcgtaatggatccaatacgaggagaaacatac
cacgagatacaactggagcaagatgaagcagccttttcagtttgtgtagccgaattctta
actcgacctggcgagcgttttgttattgtcggctgtgcatataaaatgacgctgacgcca
cacaattgtttaacggcttccatacacacgtaccgcatgtatcaaaacgatcgtggaaag
attcaattggaatttctgcacaaaacacccgtggatgatattccatctgcggtcactccg
tttcaaggacggattttagtgggcgtcgggcgtattctgcgtatctacgacatgggcaaa
aagaaattattacgcaagtgtgaaaacaagaaaatttcttctttcatcaacggaattgac
acgattggctaccgtataattgtccatgacattcaagactcgtttcacttcttgaagtac
aagcgcaaagagaatcaactcgtcctgtttgccgacgacgtcagcacgcggtttttgacc
tgcggctgtctaatggattacgacactatggccggcgccgataaattcggtaatgtattt
ttcgtcagattaccacaagacgtaaaagatgacattgaggaagatccgacaggagttaaa
gctttatgggataggggcttgttaaatggagcttcgcaaaaggctgacaccgtatgcata
tatcacgttggtgaaaccattctctctctacaaaaatctacactgatacctggcggttcg
gaatcgcttgtttacaccacgttgtctggtggtgtcggaatgttagtcccttttactgga
cgagaggatatcgacttttttcaacatttggagatgcacatgcggcaagaaaatccgccc
ttgtgtgggcgtgatcatttgtggtatcgctcatcatacgcccctctaaagaatgttgtg
gatggcgatctgtgtgagcagtttaattcacttgaatacagcaaacgaaaaacaatcgcg
gaagaattggatagaactccagctgaggtttcgaaaaagctcgaagatatacgtacacga
tacgcattctaa
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