Hydractinia symbiolongicarpus: 130621108 Help Entry 130621108         CDS       T09218                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K06236   collagen type I alpha Organism hsy  Hydractinia symbiolongicarpus Pathway hsy04512   ECM-receptor interaction hsy04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:hsy00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     130621108  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     130621108  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:hsy00536]     130621108 Glycosaminoglycan binding proteins [BR:hsy00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130621108 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI WAP Motif Other DBs NCBI-GeneID:  130621108 NCBI-ProteinID:  XP_057292397 LinkDB All DBs Position 12:complement(20862304..20870917) Genome browser AA seq 1479 aa AA seqDB search MASSTGERLLLICLLGVCVTLVIGQSPEEKLKPGKCPDNAGRDKTECPPPENSGATCLFD IDCAGTKKCCSDGCNLICTDAILPPTPNIVTGPPGDPGDKGEPGPNGNKGESGSDGSEGA KGEKGPNGKQGRKGRRGRPGPPGPPAPTEGGGETPVGPIGDEKGPGPHAGGDTAGSSTDE GGVRPEEGPPGPPGPKGREGPRGPYGERGEPGQSGTKGKTGQKGDVGPPGSAGEPGRDGL NGERGDPGPIGEVGQRGPHGNPGAPGNNGAPGYKGVKGDRGETGIKGAPGELGDKGEAGE NGLSGEVGPRGPRGLQGPVGPTGPTGVSGPKGPIGSSGPPGPPGLAGLPGTSGDKGQDGA KGETGAVGPRGERGEQGERGVTGQPGIKGETGQLGRRGKDGKNGPKGSMGPAGPQGSRGS PGQRGLQGLRGPDGSIGPIGGRGEPGDQGNVGPAGQKGQAGDPGPPGKPGTAGGPGRRGK SGRDGPPGPSGPVGDRGAPGIPGSPGTPGNTGAKGQQGDRGAIGKAGEKGTAGGPGEPGE VGSQGDQGPAGPAGKTGRPGKQGVRGTPGKDGRPGTSGQQGARGKDGALGLKGPKGSKGP SGGNGEPGVPGKKGNIGDVGQKGAQGQQGASGSDGASGERGPPGPPGDDGKVGPAGPVGD AGSPGRDGEPGLNGQRGEDGKPGDQGLRGTPGANGQTGLRGSQGLAGERGERGPDGIPGT KGPTGPSGQRGSTGPTGATGNAGAKGPDGSKGTQGTRGPKGQPGDNGKDGPRGPDGLPGL SGPPGETGPKGEGGRPGANGLPGKRGKTGPQGNRGPNGSPGETGPIGQRGGDGAKGERGS RGDKGEAGPDGPPGEQGIGGLIGEIGEEGPTGSPGRTGDAGRQGPPGITGLPGKRGPRGN RGRAGPPGPAGRDGPKGSAGEVGGSGRPGDNGAPGAPGKDGRNGDPGEDGVPGVQGAMGP QGRQGTRGVPGRVGMPGFPGAQGKVGLRGEPGLAGSSGKAGRKGPAGPQGVAGMIGVPGK PGEDGLPGNDGKPGAQGPKGPKGTKGVDGFQGSPGTTGMPGIAGPGGPKGKTGANGVAGT DGQKGANGLQGPKGQLGDRGMKGYKGEPGKSGEKGDKGWRGMPGPSGLPGAVGMQGDVGL DGKKGRLGPIGNDGPRGRAGREGPPGGIGNSGLSGAKGSNGGRGRSGDDGVPGPQGPPGP PGPPGPPGGFGVGGINILPPYGGNTEKGPAYQGYRYYRSSDGKDLKTVTKENEGTVFGYL TKLEELLQGMDRPDGSQQFPAKTCGDLKMCHPDIESGKYFIDPNQGCQSDSFEVNCDFTS TRETCIYPTTSMFEKKKWVSQGKDSWNWFLRDLAMNEEFTYPANTVQLRYMRLNSNSVRQ NITYHCRNSHANKDSFGNETPYLKVLSNDELEIHTAGHIKNRLKVLSDECNKKDGKWHKT VFEYTSKITDRLPIADIAVFDVADPNEEFGLELGPICFS NT seq 4440 nt NT seq  +upstreamnt  +downstreamnt atggcctcttccactggcgagcgtttgttgctgatatgtttactaggagtttgtgttact ttggttattggtcaaagtccagaagaaaaattaaaaccaggtaaatgtcccgataatgct ggaagagacaagacagagtgtcctcctccagaaaactccggagcgacttgtttatttgat atcgattgtgcaggaacaaaaaaatgttgttcagatgggtgtaacctgatctgtaccgac gcgattttaccacccacaccgaatattgttactggtcctccaggagacccaggagataaa ggagaaccaggacccaatggaaacaaaggcgaaagcggaagtgacgggagcgagggagcg aagggagaaaaagggccaaatggaaaacaaggtcggaaaggtagacgtggaagaccagga ccaccaggacctccagcccccactgaaggtggtggtgagacacctgtaggaccgattgga gatgaaaaaggtcctggaccacacgctggcggagatactgctggaagtagcactgatgaa ggtggtgtccggccagaagaaggtccaccaggtccaccgggtccaaaaggcagagaagga cctagaggaccctatggagaacggggagagcctggacaatctgggacaaaaggaaaaaca gggcaaaaaggtgatgtaggaccgcctggatcagctggagaacccggaagagatggccta aatggagagagaggtgacccaggaccaattggagaagtcggacaaagaggacctcacgga aacccaggtgcaccaggtaataatggcgccccaggatacaaaggagtaaagggtgatcgc ggtgaaacgggtataaaaggagctcctggtgaactgggagacaaaggagaggctggagaa aatggattgagtggagaagttggaccaagaggtcccaggggcttgcaaggaccagttggt ccaacaggaccaactggcgtttctggaccaaaaggaccaatagggtcaagcggaccacca ggaccaccgggtcttgctgggctacctggaacatcaggagataagggtcaagatggtgca aagggagaaacaggagctgtgggcccaaggggtgagcgtggggagcaaggtgagagaggc gttacaggccaaccaggaattaagggggaaaccggtcaattaggtcgacgtggtaaggat ggcaaaaatggtccaaaaggaagcatgggacctgctggaccacaaggttcaagaggatcc cccggacaaaggggtcttcaaggtcttcgtggacctgatggaagcattggtcctattgga ggtcgtggtgaacctggagatcaaggaaatgtagggcccgctggacaaaaaggtcaagca ggtgatccaggaccacctggtaagcccggtacagctggtggaccaggaagaagaggaaaa tcagggagagatggtccaccaggaccttcaggcccagttggagatcgaggtgcacctgga atcccagggagccctggtacaccaggaaacactggagctaaaggacagcaaggtgatcgt ggagcgattggcaaagccggtgaaaaaggaactgcaggcggaccaggtgagccaggtgaa gttggcagtcaaggagatcagggacctgctggacccgctggtaaaactggaagacctgga aagcaaggtgtaaggggtactcctggtaaagatggtcgacctggaacgtctggccaacaa ggtgctcgtggtaaggatggagcgcttggtttaaaaggaccaaaaggatctaaaggtccg tcaggagggaatggagaacctggagttccaggaaagaaaggcaatattggtgacgtgggt caaaaaggagcacaaggtcaacagggtgcctctggttctgatggcgcttcgggagaaaga gggcctccaggacccccaggtgatgatggtaaagttggaccagctggtcccgtaggagac gctggctcacctggtcgcgatggagagcctggcttaaacggtcaacgtggtgaggatggc aaaccaggagaccaagggttgagagggactcctggagcaaatggtcaaacaggattacga ggatcacaaggtctggcaggtgaacgtggagaacgagggccagatggtattcctggtaca aaagggcctactggccctagtggacaaagaggttcaacaggacctaccggagcaactgga aatgcaggtgccaagggtccagatggatcaaaaggaactcaagggacgcgtggacccaag ggacaacctggagacaatggaaaagacggaccgagaggaccagatggtttacctggttta tcaggtccacctggtgagacaggaccaaaaggggaaggaggacgtccaggtgctaatggt ttaccaggaaaaagaggaaaaactggtcctcagggaaaccgtggtccaaatggctctcca ggagaaactggtccaattggacaacggggcggagatggtgctaaaggtgaacgtggatca agaggagataagggagaagctggtcctgatggacctcctggtgaacaaggcattggtgga ctaattggagaaataggagaagaaggaccaacaggcagtcccggtcgcactggcgatgca ggtagacaaggcccacctggtattacgggtttgcctggaaaacgtgggccacggggaaat agaggcagagcgggaccaccaggccccgctggacgtgacggaccaaaaggatctgctggg gaggtaggaggtagcggcaggcccggcgataatggtgcaccaggggcgccaggaaaggat ggtagaaatggcgatcctggtgaagatggtgtacctggtgttcaaggtgcaatgggacca caaggaagacaaggtactcgtggagtacctggtcgagttggtatgcctgggtttccgggt gcacaaggtaaagtcggactaaggggtgagccagggttggctggttcatctggtaaagca ggacgtaaaggaccagcaggtccacaaggagtagcaggaatgattggtgtcccaggaaaa ccgggagaagatggattaccaggaaatgatggaaaacctggagcgcagggtccaaaagga cccaagggaacaaaaggtgtagacggtttccaaggatcacctggaaccactggtatgcct ggtattgctggacctggaggaccaaaaggaaagactggtgcaaatggagtagcgggaact gacgggcaaaaaggagcaaatggacttcaaggacccaaaggtcaattaggtgataggggg atgaaaggatataaaggagaaccaggaaagagcggagaaaagggagacaaaggttggaga ggcatgccgggtccatctggattacctggtgcagttggaatgcaaggcgatgttgggctt gatgggaaaaaagggcgacttggaccaattggtaacgatgggccacgaggaagagctgga cgcgaaggcccaccaggaggtattggcaattctggattatctggtgcaaaagggtctaat ggaggtagaggaagaagtggagacgatggtgttccaggacctcaaggtccccccggaccc cccggacctcctggaccacctggtggttttggtgtcggtggcattaatattttaccgccg tatggtggaaatacagaaaaaggaccagcctatcaaggatacagatattacagaagtagt gatggaaaagacttaaaaactgttacaaaagaaaacgaaggaacggtattcgggtatttg acaaaactagaagaactcttacagggaatggatagaccagatggaagtcaacagttccct gcaaagacttgtggcgatctgaaaatgtgtcatcctgacattgaaagtggtaaatatttc attgatccaaatcaaggatgtcagagcgattctttcgaagtcaattgtgactttacttct actcgcgaaacctgtatctatccgactaccagtatgtttgagaagaaaaaatgggtatca caaggaaaagattcgtggaattggttcttacgtgaccttgcaatgaacgaagagttcaca tatccagccaatacagttcaacttcgatacatgcgattgaacagtaactcggtgcgccaa aatattacctatcattgtcgcaactcacatgctaacaaagattctttcggaaatgaaaca ccatacctaaaggtgctttccaacgacgaactggagatccacactgctggtcatataaag aatcgtctgaaggtattatcagatgaatgcaacaaaaaagatgggaaatggcataagaca gtgttcgaatacacgagcaaaatcaccgatagattgccgatagcagatatcgccgtattc gatgtcgctgatccgaacgaagaatttggattggaattaggaccaatttgtttttcataa

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