Hydractinia symbiolongicarpus: 130621578
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Entry
130621578 CDS
T09218
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy04140
Autophagy - animal
hsy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130621578
04148 Efferocytosis
130621578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsy04131
]
130621578
Membrane trafficking [BR:
hsy04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
130621578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_HPS5
WD40
WD40_Prp19
WD40_WDHD1_1st
Vps39_1
zf-RING_Vps41
zf-rbx1
Beta-prop_EML_2
Beta-prop_WDR19_1st
zf-RING_2
zf_RING_Vps8_fungal
zf-RING_5
zf-ANAPC11
Beta-prop_WDR90_POC16_2nd
zf_RING_Vps8
A2L_zn_ribbon
RH_dom
BUD22
Radial_spoke
Motif
Other DBs
NCBI-GeneID:
130621578
NCBI-ProteinID:
XP_057292866
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Position
12:complement(21140443..21167260)
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AA seq
870 aa
AA seq
DB search
MASNEIKLESKKTDAEEEEEDDDDDDDEEEEEEEEEEEDEEEPKLKYERIGNALLEILRE
DAASCMAVHPKFLALGTHWGVVHILDHQGNNIRSKEFPSHTTTVNQLSIDSGGDFIASCS
EDGRVVINGLYTAENNIQHTFDCPIRSIGLHPEFGKRGNRQYVIGVGEKLTMFEKGWLRN
KSTVIHAGEGFIRSVQWKNNFIAWANSQGVEVYDTSTKERISHIKRDDGSPRDDLFHCNI
CWKDDKVLLIAWADNVKVCVVKQRMPNDIRDLPTHYVEIVHMFRTDFYASGIAPFGEEIA
VLAYFVNKEDGQAPQKGLAQRPQLLVIQPQGIDSYVETSTDALSVRGFEEYLCNNYFLEH
VLEEQLFYIVSPKDIVIARPRDMDDHITWLLEKKDFKEALFKAEKNQKLLRRHSVLNIGR
SYLNFHVAQGNYKEAALMCDRVLGSSKELWEEEVYRFAKHHKLKAITPYIPYRNPKLDST
IYEMVLNEFLQTHYQGFYNLIRDWPTDLYRSQTIIYSLQAKIKEEPKKAVLLQSLATLYA
HEKKYGEALRIYLELRHNGVFEMIYEHKLLDYIQEKYLELMEIDKDKATAMFVENMEDIP
VESVVKQLKQNKKLLHQYLNGLFIKDPQAGQEFHNLQVELYAEYQKDRLLSFLRNSNYYQ
LEKALDVCEERGYIQEMVFLLGRMGNNKKALSLIIDKMNDIQKAIDFAKEENDEDLWYDL
ITQSLNKPAFIKELLFNIGTHVDPQKLIKRIPPGLKIPSLRDALVKILQDYNLQVSLHEG
CKTILDKDSVALIQKQVKCQTRGYVVRDNHKCQGCQGELIVDDSRNASNLVCFHCQHYFH
DYCLQQARQVESFCPICASSKSSTRKKALR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaatgagataaagttggagagtaaaaaaacagatgctgaagaggaagaagag
gatgatgatgatgatgatgatgaagaagaagaagaagaagaagaagaggaggaagacgag
gaggaaccaaaattaaaatatgaaagaattggcaatgcattacttgagattttacgtgag
gatgctgccagttgtatggctgtccatccgaagtttcttgctcttggtactcattggggt
gttgttcatatcctcgaccatcaaggaaataacattcgtagcaaagaatttccatcccac
acaaccactgtcaaccaacttagtattgactcaggtggagattttattgctagctgttca
gaagatggacgtgttgttataaatggattatatacagctgaaaacaatatccagcataca
tttgactgtcccatcagatctattggtttacatcctgaatttggtaaacgtggcaaccgg
cagtatgtaattggagttggtgaaaagcttacaatgtttgaaaagggttggttacgaaat
aaatcaacagttatacatgctggtgaaggattcatcagatcagtccaatggaaaaataat
tttattgcttgggcaaattcacagggtgtagaggtgtacgacacaagcacaaaggaaaga
ataagccatataaaacgagatgatggaagtccacgagatgatttatttcactgtaacatt
tgttggaaagatgacaaagtattattaatcgcatgggctgataatgtgaaggtatgtgtt
gtaaaacaaagaatgccaaatgatattcgtgacttgcctacacattacgtagaaattgtt
cacatgtttcgtactgatttctatgcatctggcatagccccatttggtgaagaaatagct
gtgttggcctattttgtaaataaggaagatggtcaagcacctcaaaagggacttgcacaa
agacctcaattgttagttattcaacctcaaggaattgatagttatgtagaaacatccact
gatgctctatcagtacgtggttttgaagaatacttgtgcaacaactatttcttagaacat
gtccttgaagaacaattattttacatcgttagtccaaaagatattgttattgcaaggcct
cgtgatatggacgatcacataacttggttgcttgagaaaaaagacttcaaggaagcatta
tttaaagctgagaagaatcagaagttgctaagacgtcattcagttcttaatattggaaga
tcgtatctgaattttcatgttgctcaaggaaactacaaagaagctgcactaatgtgtgac
agggtgcttgggagtagcaaagaattatgggaagaagaagtatacagatttgcaaagcat
cacaaattaaaggctattactccatacatcccttaccgcaatccaaagttagatagtact
atttacgaaatggtgttaaacgagtttctgcaaacacattatcagggattttacaacttg
attagagattggccaaccgatttgtatcgatcacagacgattatctactctttgcaggca
aagataaaagaggaaccaaaaaaagcagtgttacttcaatccttagcaacattgtatgca
cacgagaagaaatacggtgaagcgttacgaatttatttagaacttcgtcacaatggcgtg
ttcgaaatgatatatgaacataaattacttgattacattcaagaaaagtacttggagttg
atggaaattgataaagataaagccactgcaatgtttgttgagaatatggaagatattcct
gttgaaagcgttgtaaagcagttgaaacagaataaaaagcttttgcaccagtatttaaat
ggactgttcataaaagatccgcaagcaggtcaagagttccacaacctgcaggttgaacta
tacgccgagtatcaaaaagatcgcctgctgtcatttttacgcaacagtaattactaccaa
ctggaaaaggctttagatgtttgtgaagaacgtggttatatacaagaaatggtgtttttg
ttgggtcgcatgggcaacaacaaaaaggcgctatcattaattatcgataaaatgaacgat
attcaaaaggctatcgattttgctaaagaagaaaatgatgaagatctgtggtatgatttg
atcactcagtctttaaacaaaccagctttcatcaaagaattgttattcaatattggtaca
catgttgacccgcaaaaactaataaaacgtattcctcctggtctcaaaatcccgtcactg
cgagatgcactggtaaagatacttcaagactacaatctgcaggtctccctgcacgagggc
tgtaaaaccatactagataaagatagtgttgcgttgattcagaaacaagtgaaatgtcaa
acaaggggttatgtagtacgagacaaccataaatgtcaagggtgccagggcgagttaatt
gtcgacgacagcagaaatgctagcaatcttgtatgttttcactgtcaacattactttcat
gactattgtcttcaacaagccagacaagtggaatctttctgccccatctgtgcatcgagt
aaatcttccacgagaaaaaaagctttgcgttag
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