Hydractinia symbiolongicarpus: 130621847
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Entry
130621847 CDS
T09218
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130621847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsy03021
]
130621847
03036 Chromosome and associated proteins [BR:
hsy03036
]
130621847
Transcription machinery [BR:
hsy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130621847
Chromosome and associated proteins [BR:
hsy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130621847
PBAF complex
130621847
GBAF(ncBAF) complex
130621847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
130621847
NCBI-ProteinID:
XP_057293183
LinkDB
All DBs
Position
12:complement(22071390..22085935)
Genome browser
AA seq
1098 aa
AA seq
DB search
MAATKKDGGANSKYWDSPETIESLEPVRQWLLKNSKKFVQAESPSTKSLAELVKQMIQFQ
EDAFGKNISKPPLTRLSMKILTDNTPGGGLCHVLASAFKYKVDQGWRRFDFQSPSRMDRN
VELFLNIERSLKEKNLLKPPKICFEPTMDTKHLLRLRDIVKRHQGIIVEEKSDATHIVHS
PPSSYSSEGNLYLTKKNILPSTEEEWIRPIMKLDKTVLVHWWYYPDSYDSWIPLSECDQE
PEPAPQKTKPWEVNGRWLLDMDLYNEWMNEEDYEVEDSSMGPVSPQEKGTKRKIKGRLMS
DDGSSRKRKLMTSPEPNGKKKKKGKSKEEMEGDNDSTLELPDPEPVPNPTVLPVDDTQLA
IISKVNAVVDLSNNTPANENTKEDKEEENKEKLKKERSNDKPVAKISEEVHRDPEMPHDD
NLPEQTRHIVIPSYAAWFDYNSIHAIERRALPEFFNGKNKSKTPEIYMAFRNFMIDSYRL
NPTEYLTATACRRNLAGDVCSIIRVHAFLEQWGLVNYQVDTDSRPLPMGPPPTSHFHALG
DTPSGLQPLLPPKSNISASQQLINLADKDRKPDTEDVTDLSNFGLRNDVYLTKKAQKSRS
AAYKEWTDQETLLLLEGLELHKDDWNKVSEHVGTRTQDECIMHFLKLPIEDPYLENDTSG
FLGPLAYQPMPFSQSGNPVMSTVAFLSSIVDPRVASAAAKAAIDEFTKLKEEIPEDLIHA
HVERAQAELKAEEQKKEAEGTEDVEMKDGEEKQKSEEAQSEEKPAVSPAKKLTEEEKEKV
KAHQKLTDGNIKTAASAAIAAAAVKAKHLAQVEERKIKSLVALLVETQMKKLEIKLRHFE
ELETIMDKERDMLEQQRQALIKERQEFYMDQIKAQEARATKTGDVLDMQPHPPSATPAVP
AVSLSAESEKKEDFDPTKTSTADTKIPGPDFLQHQMTTARSGGPSLSVLSPMEPKRDLTS
SGSPAVTAAELLTAKAPVPLNNAQEEKKIPELPPYAAQPPPMPTSTGRGRNRGGRGRGGH
GRGGQNNTDAMHQAYMANMPPYSGYAGFPGQQMAGMAPGMQGFQPNPMMQAGAGMMPNMN
PAQFPAGQFPPGGQFPPM
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaacaaaaaaggacggcggcgctaactcaaaatattgggattcaccagaaact
attgaatccctcgagccagttcgacaatggttacttaaaaattcaaagaaatttgttcaa
gctgaatctccaagcacaaaaagtttggcggaattggtaaaacaaatgatacaatttcag
gaggatgcttttggtaaaaacatcagtaaaccccctctcactcgactatctatgaaaatt
ttaactgataacacacctggtggtggactgtgtcatgttttagctagcgcattcaaatat
aaagtggaccaaggatggagacgttttgatttccagtctccatctcgcatggatagaaat
gtagaattatttctcaatatagaaaggtcattaaaggagaaaaatttgctgaaaccacca
aaaatctgttttgaacctacaatggacacaaaacatttactcaggttaagagatattgtt
aaaaggcatcagggtattattgtggaggagaaaagtgatgcaactcatattgtacattcc
ccaccttcttcatattctagtgaaggtaacttgtatttgacaaaaaaaaacattctgccg
tccactgaagaggagtggattcgtcccattatgaagctagacaaaactgtattggtgcat
tggtggtactatccagacagttacgattcttggattcctttgagtgaatgtgatcaagaa
cctgaaccagctcctcaaaaaaccaagccatgggaggttaatggtcgttggcttcttgat
atggatttatataatgagtggatgaatgaagaagattatgaagttgaagatagtagcatg
ggccctgtttcaccacaagaaaaaggaacaaagagaaagattaaaggaaggctaatgagt
gacgatggtagcagtagaaagcgtaagttgatgacatcacccgaaccaaatggtaaaaag
aaaaagaaaggaaagagtaaagaagaaatggaaggagacaacgactcgacacttgaacta
cctgatcctgaacccgttccaaatccgacagttttaccagtggatgacacacaactagca
attatcagtaaagttaacgcagtggtggatttgtcaaataatactcctgcaaacgagaat
acgaaggaagacaaagaggaggaaaataaagaaaagctgaagaaggaaaggagcaacgac
aaaccagtagcgaagatttccgaagaagtacatcgcgatccagaaatgcctcatgatgat
aaccttcccgagcaaactcgacacatcgttattccaagttacgcagcttggtttgattac
aatagtattcatgctattgagcgaagagctttgccagaattttttaacggcaagaataaa
tccaagactccagaaatatatatggcattcagaaactttatgattgattcttaccgccta
aatccaactgaatacttgactgcaactgcctgcagaagaaatttagccggcgatgtttgt
tctattattcgtgtccatgcttttttggagcaatggggtctagtaaactatcaggtagac
actgatagccgcccgctacccatgggtccacctccaacgtcacatttccatgcactgggt
gatacaccttctggattgcagcctctactgccaccaaaatctaatatttctgcgtcgcag
caattaattaatctagctgataaggacagaaaaccagatacagaggacgtcacagatctt
agcaattttggtttacgtaacgatgtgtacctaacaaagaaagcacagaagagtcgatca
gctgcttataaagaatggactgatcaagaaacgttactgttgttagaaggactggaactc
cataaagatgattggaacaaagtatcggaacatgtaggaacaagaacgcaggacgaatgc
atcatgcatttcttaaaactaccgattgaagatccatatttagaaaatgacacatctggt
ttccttggtcctcttgcctaccaaccaatgccgtttagtcagtctggtaatccagtgatg
tctaccgtagcatttctttcttctatcgtcgaccctcgtgtggctagtgcagctgcaaag
gcagccatagatgaatttacaaaactgaaagaagagattcctgaagatctgatacatgca
cacgtagaaagagcgcaagcagagcttaaagctgaagaacaaaagaaagaagctgaagga
acagaagatgttgaaatgaaagatggtgaggagaagcaaaagagcgaagaagcacaaagt
gaggagaaaccagcagtatctcctgcgaagaagttgactgaggaagagaaggagaaagtg
aaagcccatcaaaaacttacagatggaaatatcaaaacagctgcttctgctgctattgca
gctgctgcagtgaaagctaagcacctagcgcaagtggaagaacggaaaatcaaaagtttg
gtggctttacttgttgaaacacagatgaagaaactggaaatcaaactgcgtcattttgag
gagttggaaacaatcatggataaagaaagagacatgttggaacaacagcgacaagcgctt
ataaaagaacgacaagaattttacatggatcagataaaagcacaagaagccagagcaact
aagacaggagatgtacttgatatgcaaccccacccaccgtcagccacgcctgctgtccca
gcggtttctctgtctgccgaatcggaaaaaaaagaggattttgatccaaccaaaacttcc
accgccgacactaaaataccaggaccagatttcttgcagcaccaaatgactacagctcga
tcaggtggaccgtcgctatctgtactgtctccgatggaaccaaagcgtgatctgacatct
tcaggctcccctgctgtcactgctgctgagttactaactgcaaaagctcctgttcccctt
aacaacgcacaggaggagaagaaaatacctgagttaccaccatacgctgcgcaacctcca
cctatgccaacaagcaccggacgtggtcgcaataggggaggaaggggtagaggtggtcat
ggacgtggaggccagaacaatacggatgcaatgcatcaagcctacatggctaacatgcca
ccctacagtggttacgctggctttccaggtcagcaaatggctggtatggcaccgggaatg
caaggctttcaacctaatcctatgatgcaagcaggtgctggaatgatgccaaatatgaac
ccggcacaattccctgcaggacagtttcctcctggaggtcagtttccaccaatgtaa
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integrated database retrieval system
