Hydractinia symbiolongicarpus: 130621874
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Entry
130621874 CDS
T09218
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy04512
ECM-receptor interaction
hsy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130621874
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130621874
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsy00536
]
130621874
Glycosaminoglycan binding proteins [BR:
hsy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130621874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
130621874
NCBI-ProteinID:
XP_057293215
LinkDB
All DBs
Position
12:complement(10881830..10890877)
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AA seq
1435 aa
AA seq
DB search
MAKIRVSTLLLLALFIGLAKSQITAPGVLLQLGDVAVISPAEAQKGEKGVKGGRGPPGDD
GTAGANGGVGPQGPEGEEGFEGDEGDEGPQGPPGPPGRPGGNQTAIVVVYGPPGPNGPIG
PPGRTGPKGYIGETGEPGSPGDSGPRGEPGVVGPKGTAGKDGVNGPKGETGSVGPSGATG
LPGLPGPSGQRGAKGSKGESGEIGNKGAKGDAGRNGEEGDSGLPGTKGEPGSRGPNGTVG
FAGPDGQEGPMGPLGDAGPEGNKGPRGPRGPDGPPGVAGPPGESGATGPSGPTGQPGKRG
EPGYQGARGASGDRGPTGPTGQDGGDGAAGGRGQPGPPGMPGSSGPAGPRGENGKPGQRG
LRGQQGEQGGPGLQGSVGERGDKGPRGLAGQPGISGPPGESGVDGRPGPAGPPGNPGQRG
TSGMPGSPGLPGFPGIKGHVGPRGFRGKFGEKGTRGETGRTGQRGIPGPRGPPGDPGLAG
PDGKNGERGQPGKDGIPGSPGQSGPRGIPGRQGLAGERGDKGAKGRQGDPGFDGTPGEQG
EVGPNGDQGLPGPRGRKGDQGDPGDQGARGAAGLTGPQGAAGPRGRQGRRGKAGNPGERG
NDGLPGRPGERGFPGEQGNPGAPGSPGISGRKGPAGQPGQKGSQGDPGTPGEVGSPGAVG
RPGVSGEQGAPGAQGDQGEVGEPGDRGRDGQPGLRGSMGPRGPVGPRGNPGQRGDSGIPG
DDGKPGASGAPGPAGLGGEPGQPGQRGGMGSPGISGAPGDVGAKGLKGNRGKRGKTGSAG
RVGDNGVKGPRGPKGLRGQSGRQGIPGLPGNTGVPGPVGLLGEQGPSGPPGAVGKPGPKG
DKGRSGPDGRPGTNGRPGPDGSNGLDGRSGKDGSRGVQGNPGPRGKQGLAGFVGGSGAPG
VPGRRGQRGPTGEKGADGKNGVDGEPGDEGPQGPQGAQGESGSDGADGIPGRNGSPGLTG
LRGDKGERGSAGLKGKKGDKGQTGPDGPPGARGDRGSTGASGADGDKGDDGSKGEAGLPG
PLGANGDRGDTGKRGEKGDIGFMGFKGKKGPRGSKGTRGLPGYMGEQGDLGPKGRQGPTG
PNGPAGVSGPMGPPGVKGPTGDPGPKGYSGKDGRQGPPGPPGPPGLTGPAVLPPWLGGGL
AEGETKGPDEETGPEEPGPNPEEPTPNINPFFQVYKYYSSDTKKTNPTDKDLDHLEKKFA
EKVQKLKSEVAKLEKPDGSESYPARTCKDIHAFHPTFKSGMYWIDPNKGCKEDKIRVHCN
FNITDEEDMVTTCVYPQNKMTIEKASWGSKLLTKAQKWFDEDHELGKLAYSAELSQLTYL
GYLSKEAFQNVTIHCQKSIAWFDRQNNNYKKSLKFKGTDEQEFKYIPKDANDDESKFSPE
VLKDDCAFLSSAWKETVLRFSSKKFIRLPIVDMAPWYNSDAKSQFGLELGPVCFM
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaataagggtttcgaccttgctattgctagctttgttcattggactcgcaaaa
tctcagataacagcgcctggagttctccttcaacttggggatgttgctgttatctcacct
gcagaggcacaaaaaggtgaaaagggagtaaaaggaggtcgtggaccaccaggtgatgac
ggaacagctggagcaaacggaggagtaggacctcaaggacccgagggagaagaaggattt
gaaggtgacgaaggggatgaaggaccacaaggacccccaggaccaccaggtcgtccagga
ggaaatcagactgctatcgttgttgtatatggaccacctggaccaaacggaccaatcggt
ccgccaggaagaacaggacctaagggatacattggtgaaactggcgaacctggaagtcct
ggcgattctggaccaaggggtgaacctggagtggttggtccaaaaggaactgccggaaaa
gatggagttaatggacccaaaggcgaaaccggaagtgttggaccaagtggagctactggt
cttcctggccttccaggaccttctggacaacgtggtgctaaaggatccaaaggagaatca
ggagagataggtaataaaggcgcgaaaggtgatgcaggacgaaatggagaagagggtgat
tctggcctaccaggaacaaaaggtgaaccggggtcaagaggtccaaacgggacagttggt
tttgcaggacctgacggacaagaggggccaatgggtcctcttggagacgctgggccagaa
ggaaataagggacctagaggaccgagaggtcctgatggaccgcctggtgttgctggacca
cccggagagagcggagctactggaccgagcgggccaactgggcaacctggaaaaagaggt
gagcctggttatcaaggtgcacggggtgcctctggagatcgtgggccgacaggtcctact
ggccaggacgggggcgacggtgctgctggtgggcgtggtcaacctggaccacctggtatg
cctggatcatctggaccagcaggtccacgtggagaaaatggtaaacctggacagagaggt
ttaagaggacaacaaggagaacaaggaggtccgggtttacaaggatctgttggagagcga
ggagataaaggaccaagagggttagcaggacaacctggtatatctggaccccctggagaa
agcggagttgatggtagaccgggaccagcaggtccaccaggtaatcctggtcaaagggga
acctctggtatgccaggttctccaggactgccaggatttcctgggattaaaggtcatgtg
ggaccaagaggtttcaggggaaaatttggagaaaaaggaactcgtggtgaaactggtaga
actggtcaacgtggtattcctggtcctcgtggtccacctggagaccctggtttagctggt
cccgacggaaaaaatggggaaagaggtcaacccggaaaagatggaatacctggatcacct
ggccagtctgggcctcgaggtattcctggcagacaaggcttagctggtgaaagaggtgac
aagggtgcaaaagggcgtcaaggggatcccggatttgatggtacccctggagagcaagga
gaagtaggacctaacggtgaccaaggattacctggaccaagagggagaaaaggagaccaa
ggggatcctggagatcaaggtgcacgtggtgcagctggtttaactggtccgcaaggagca
gcaggaccacgaggaaggcaaggaagacgtggaaaagctggtaacccaggtgagagagga
aatgatggtttacctggaagacctggtgaacgtggattcccgggagagcaaggaaatcct
ggtgctcctggatcgcctggaatttctggacgaaagggacctgctggtcaacctggccaa
aaaggttctcaaggtgatcctggtacgccaggtgaggttggatcccctggagcagttgga
agacctggagtatctggagaacaaggagctcctggagcccaaggagatcaaggagaagtg
ggagaacccggagatcgaggaagagatggtcaaccaggtttaagaggatcaatgggacct
cgtggtcctgtaggccctaggggtaatcccggacaacgtggagactctggaatacctgga
gatgatggcaaaccaggagcctctggagcaccaggtccagccggacttggaggagaacct
ggacaacccggacaacgaggtggtatgggaagtcctgggatatcaggagcacctggagat
gttggtgctaaaggtttaaaaggtaacagaggaaaacgtggcaaaacaggaagtgctgga
agagtaggagataatggagtaaaagggcctcgaggaccaaaaggcttaagaggtcaatct
ggaagacagggaatacccggtttacccggtaatactggcgttcctggacctgtaggtctt
ttaggcgaacaaggtccttcaggaccaccaggggctgttggaaaaccaggacccaaagga
gacaaaggacgaagtggacctgatggtcgcccaggtactaatggtcgaccaggacccgat
ggatcgaatggtctggacggacgttctggaaaagatggaagtcgtggtgtgcaagggaac
ccaggaccaagaggaaagcagggtctagccggatttgttggaggttctggtgcgccaggc
gttccaggacgaagaggacaaagaggaccaacgggggagaaaggtgctgatggtaaaaat
ggagttgatggagaacctggtgatgaaggtccacaaggaccacagggagcacagggtgaa
tccggttctgacggggctgacggtattccaggacgaaatggaagtcctggtttaactgga
ctaagaggcgataaaggtgaacgtggatcagcgggtctaaaaggcaagaaaggtgacaag
ggacaaacaggccccgatggcccaccaggtgcacgtggagatagggggtcaactggagca
tcaggagcagatggagacaaaggagacgatggaagcaagggggaggctggactaccaggt
cctttgggggctaatggtgatcgtggggatactggcaagagaggagaaaaaggtgatatt
ggctttatgggatttaaaggaaaaaaaggtccaagaggctcaaaaggaaccagaggattg
cctgggtatatgggagaacaaggggatcttggccctaaaggaagacaaggtccaacagga
ccgaatgggccagctggagtttcagggccaatgggaccacctggagttaaaggaccaact
ggtgatccaggaccaaagggttacagtggaaaagatggacggcaaggtccacctggacct
cctgggccaccgggtctcactggacctgcagtgcttccaccgtggttgggaggtggattg
gcagaaggagaaacgaaaggaccagatgaggagacaggtcctgaagaaccaggaccaaac
ccagaagaacctacaccaaatatcaatccttttttccaagtatataaatattactcaagc
gacacgaagaaaacaaatcctaccgataaagatcttgatcatcttgaaaaaaaatttgct
gagaaagtacaaaagttaaaatctgaagttgcaaaattagaaaaaccggacggatctgag
tcgtatccggcacgcacctgcaaagacattcatgccttccatccaacattcaaatctggc
atgtattggatcgatcctaacaagggatgcaaagaagataagatcagagttcattgcaac
tttaacataaccgatgaggaggatatggtaacaacatgtgtctatccacaaaacaaaatg
actatcgaaaaggcaagctggggaagtaaactgttaacaaaagcgcaaaagtggttcgac
gaggatcatgagcttggaaagcttgcttattcagcagaattatctcaacttacttacctc
ggatacttaagtaaagaagccttccaaaacgtcaccatccattgccagaagtcgattgcg
tggtttgatcgacagaacaacaactacaagaaatccttaaaatttaaaggtactgacgaa
caagaatttaaatacattccaaaggacgctaacgatgatgagtctaaattctctcccgaa
gtcctaaaggacgattgtgctttcctctcgtcagcatggaaggaaacagtacttcgcttc
agtagcaagaagtttattagacttcctattgtcgatatggcaccgtggtacaacagtgat
gccaagtcgcagtttggactagagttgggtccagtatgtttcatgtag
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