Hydractinia symbiolongicarpus: 130621926
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Entry
130621926 CDS
T09218
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130621926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130621926
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130621926
U7-dependent histone pre-mRNA processing factors
130621926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
T6SS_HCP
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
130621926
NCBI-ProteinID:
XP_057293277
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All DBs
Position
12:complement(23437413..23452945)
Genome browser
AA seq
749 aa
AA seq
DB search
MTSIIHFTALSGAQNEGPLCYLLQVDEFKFLLDCGWDENLDPNVVDNICRHAHSIDAILL
THPDIYHIGALPYLVGKCNLHCPVYATIPVYKMGQMFLYDFYQSHQNYQEFPHYTLDDVD
SAFDKIIQLKYSQHVSLKGRGHGLSITPYAAGHMIGGTMWKIMKEGEEDIIYAVDYNHKK
EIHLNGAVLETLSRPSLLITDALTVLNVQARRRERDIQLMNTILSAVRKDGNVLLAVDTA
GRILELTQLLDQLWRSKDSGLCAYSLAILNNVSYNVVEFAKSQVEWMSDRMMKTFETARS
NPFAFKNITQCHTMKDLEQISSPKVVLASTADLNSGFSRELFIEWASNPKNSVIFTYKTA
PGSLARTLIDNPNIGVVELDVAHKVKLEGAELAQYLEVEKEKARQLKLTRKSIESESRHE
NVFKEESESEDENEDATMNATKSKYDLMLTDEKLRHKSSFFKQAKIYPMFPYKEERLKWD
DYGEIIKPEDYMITEPTTLEEEVPESKFQDIKEDMEVLEMKEIPTKSVMKKVTVDVRCQI
TYIDFEGRSDGESVKRILTLVKPRQLIVVHGTRKATKALSEYCRSSNTMNVSRIFTPKEN
EMVDATRESHIYQVKLKDSLVSSLKFATAQDTELAWVDGQLVMEERGEKFDKMETDEYKS
KDVVPVLEQLPPELIPSHTTVFIDEPRLSDFKQVLTKSGIQAEFAGGVLVCNNIVAVKRN
EQGKITVEGGLCEEYYQIRDLLYEQYAIV
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatcatccattttacagctctttctggagcacaaaatgaagggcctctgtgt
tatttgttacaagtagatgaattcaaatttcttttggattgtggatgggatgagaatctt
gatcctaacgtagtggacaatatttgcaggcatgcacattctattgatgcaattttactg
acgcaccctgacatctaccatattggtgcactaccatatctagttggaaaatgcaacctt
cactgtccggtgtatgcaactattcctgtatacaagatgggacagatgtttttgtacgac
ttttatcagtcccaccaaaattatcaagagtttccacattataccctagatgatgttgat
tctgcttttgacaaaattattcagctgaaatattctcaacatgttagtctcaaagggcgt
ggccatggtctgagcattacaccatatgctgctggtcacatgataggtggtacaatgtgg
aagataatgaaggaaggtgaagaagatatcatatatgctgttgactataaccataagaaa
gaaattcatttaaatggtgcagtcttggagactctaagcagaccatcacttctcataaca
gatgcattaacggtacttaatgtacaagcacgaagacgagaaagggatatacagctgatg
aataccattttatcagcagtacgtaaagatgggaatgtcttgctggctgttgatactgct
ggtcgcatcttagaattgacacagttgcttgaccagttgtggcgatcaaaggattctggg
ttatgtgcatactcattagctattctaaataatgtcagttataatgtagtggaatttgca
aaaagtcaagttgaatggatgagcgatcgtatgatgaaaacatttgaaactgcacgatca
aacccatttgcttttaaaaatattacccaatgccacacaatgaaagatcttgaacagatt
tcatcaccaaaggttgtgctagccagtaccgcagatttaaacagtggtttctcacgagag
ttgttcatcgaatgggcgtccaatccaaaaaatagtgtcatctttacatataaaactgct
cctggatccttagccagaacattaattgacaatcctaacataggagttgttgaattagac
gttgcacataaagtgaaattggaaggagctgaattagcacaatatttagaagttgaaaag
gaaaaggcaagacaattaaaattgactcgcaaatccatagaatcagaaagcagacacgaa
aatgtttttaaagaagaaagcgagagtgaagatgaaaatgaagatgcaacaatgaatgca
actaaatcgaaatatgatctcatgttgactgatgaaaagcttcgtcacaaaagcagtttt
tttaagcaagcgaaaatttatccaatgtttccctacaaagaagaacgtttgaagtgggat
gattatggagaaattatcaaaccagaagactacatgatcactgaacctacaacattagaa
gaagaagtaccagagagtaagtttcaagacattaaagaagacatggaagtgttagaaatg
aaggagattccaacgaaaagtgtaatgaagaaagtcacagttgatgtcagatgtcaaata
acatatattgatttcgaaggacgttctgatggagagtctgttaaaagaattctcacgttg
gtgaaaccaaggcaacttatagttgtgcatggtacacgaaaagctaccaaagcactatcc
gaatactgtcgctccagtaatacaatgaatgtttcacgaatattcaccccgaaagaaaat
gaaatggtggacgctactagggaaagtcatatatatcaagtgaaattaaaagattcgttg
gtcagctctctaaaatttgccactgctcaagacacggagttagcatgggtagatggccaa
ctggtgatggaggagaggggagaaaagtttgataaaatggagactgatgaatataaaagc
aaagatgtcgtaccagtgttggaacaactgcccccagaactgatacccagtcacaccacg
gtttttatcgatgaaccaagattaagtgattttaaacaagtactcactaaatctgggata
caggctgaattcgctggtggtgttcttgtctgtaataatatcgtcgccgtaaaaagaaat
gaacaaggtaaaatcactgtggaaggaggtttatgtgaagaatattatcaaatccgtgac
ttgttatacgaacagtatgccatagtttaa
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