Hydractinia symbiolongicarpus: 130622031
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Entry
130622031 CDS
T09218
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130622031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130622031
Enzymes [BR:
hsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
130622031
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130622031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
MMR_HSR1
AAA_24
nSTAND3
TniB
CbiA
Motif
Other DBs
NCBI-GeneID:
130622031
NCBI-ProteinID:
XP_057293408
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All DBs
Position
12:11285145..11290260
Genome browser
AA seq
428 aa
AA seq
DB search
MDTDTPSAQAPPKKEWTLEVDHELRLEVAKDNEVEVMIVDGQAEIFGTELVRNRRYLFGS
GAKVAVFTWHGCVVEVTGELEVSYISGETPMVIYLNVHMAIEQMRQKVEKQNDSSIGPKV
MICGPVNVGKSTLSRILLNYSVRMGRRPIFVDLDVGQGSISVPGTMGALLVERPADAEEG
FSLQTPLVYNFGNASPADNMKLYNVLATQLADVVFKHFEHNEKAGVSGCIINTCGWVTGG
GFKILMNIVQVFKVDVILVLDHERVYNDFKTNLGDLVQCVHLPKSGGVFERSQEQRRNAR
DEKIREYFYGGRTPLYPHVFDVKFDEVKLFKIGAPEVPDSCLPLGMEPEDSSMKAVPVAP
SVALLHSLCAVSAAESPEDDLTKSNVVGFIVITNVDIESKMFTVLSPAPRPLPKEYLIVS
DIKFMDLK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacactccttctgctcaagcaccacctaaaaaggagtggactttagaagta
gaccacgaattacgacttgaagtagctaaggacaatgaagtagaagttatgatagttgat
ggccaagctgaaatatttggtacagagttggtccgaaataggcgctatttatttggtagt
ggtgcaaaagttgctgtttttacatggcatggatgtgttgtggaggtaacaggtgaatta
gaagtaagttatatttctggtgaaacaccgatggttatatatttaaacgtacatatggca
attgagcaaatgagacaaaaagttgaaaagcaaaatgacagttccattggtccaaaggtg
atgatatgtggacctgtcaatgttggaaaatcaactctcagtcgtattcttttaaattac
agtgttcgaatgggaagaagaccaatatttgttgacctcgatgtggggcagggatctata
tctgttcctggaacaatgggtgctcttcttgttgaaaggccagctgatgcagaggaaggg
ttttctttacagactcctttggtttataattttggaaatgcaagtccagccgataacatg
aaactgtacaatgttctagccacacagttagcagatgttgttttcaaacatttcgagcat
aacgaaaaagctggcgttagtggttgcatcattaacacctgtggttgggtgacagggggt
ggattcaagattctcatgaatattgtacaagtttttaaagttgatgtgatcttggtgtta
gatcatgaacgtgtttacaacgatttcaaaacaaatcttggtgatttggttcaatgcgta
catttgcctaaatctggtggggtctttgaaagaagtcaagagcagagaagaaacgcacgt
gatgagaaaattcgagaatatttttacggtggccgaacaccgttgtatcctcatgttttc
gacgtaaaattcgatgaagtgaaactgtttaaaattggagctcccgaagttcccgactcc
tgtttaccactcggtatggaacctgaagacagtagtatgaaagctgttcctgtagcacca
agtgttgctctacttcattcattgtgtgctgtcagtgctgccgaatcgccggaagacgat
ttaacgaaatccaatgttgttggattcattgtaattacaaatgtagacattgagtcaaag
atgttcacagttttatcgccagcacccagacctctgccgaaagaatatttaatagtgagt
gacattaaattcatggatttaaagtag
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