Hydractinia symbiolongicarpus: 130622689
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Entry
130622689 CDS
T09218
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130622689
09123 Folding, sorting and degradation
03018 RNA degradation
130622689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130622689
03041 Spliceosome [BR:
hsy03041
]
130622689
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130622689
mRNA degradation factors
5'-3' decay
Lsm complex
130622689
Spliceosome [BR:
hsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130622689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
130622689
NCBI-ProteinID:
XP_057294163
LinkDB
All DBs
Position
12:complement(18297222..18297675)
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AA seq
92 aa
AA seq
DB search
MTSAPTANNPSQLLPFELIDKCIGSKIHIIMKTDREIVGTFLGFDDFVNVVLEDVTEFEN
TPEGRRVTKLDQILLNGNNITMLVPGGEGPEM
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctgctcctactgcaaataatccgtcccagttgctaccattcgagttgattgat
aaatgcattggatcgaagattcacattattatgaagacagatcgtgagattgttggaact
tttttaggttttgacgactttgtaaatgtcgttttagaagatgtcacagaatttgagaat
actccagagggccgaagggtaaccaagttagatcaaatattattgaatggtaataatatt
acaatgttagttccaggtggtgaaggacccgaaatgtga
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