Hydractinia symbiolongicarpus: 130623903
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Entry
130623903 CDS
T09218
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130623903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130623903
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130623903
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130623903
Messenger RNA biogenesis [BR:
hsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130623903
DNA repair and recombination proteins [BR:
hsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130623903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130623903
NCBI-ProteinID:
XP_057295431
LinkDB
All DBs
Position
13:complement(24543826..24546218)
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AA seq
536 aa
AA seq
DB search
MDKILQLFCRLQQTFLINNINNIILKPQQVKCFEHLLNGYDVIGVLPTGFGKSLLFHLLA
DFLPRKSVQNIVLVVCPLNSIIEDQLKVLEVRGIGAGVLHLEQTVVPEKLFSCGENGEPE
IPISIKNGELKLVFAHPESLLSVRGRELLKSSVYQENVVSCVIDEAHCVSMWGEDFRKIF
SELSTLKALFPDAVTLALTATATPDTVEYLIKSLALITYKVIAVSPNRKNVYLNIQRRPN
SNLGLKGFEVILKPLAKKLNVQREHYPMTIIYMHLRYCGYGYKLFENVIRNHYVGDNICP
RARLFAQFHASCTTQMKEDILKELKKSDSRIRVVFATTALGMGVDAPNISNIIHISPPST
LESFVQEIGRGGRNGVACDSLLYVNNSDLASKYISDSMKKYCVWDRCLRVFLLNYFGFKS
KTQINCCKNCNVGADSAIDIKLNALDDNKKIARNIVGADMEMLKVELLKTVEDINSDENV
MFPFHSKINTNIVNEILRELAFISCESDLLSMFGIWNERCSKELYALIDKYAPKIV
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggacaagatattgcaattattttgtagattgcaacaaacttttttaattaataacata
aataatattatcttaaagccacagcaagttaaatgtttcgagcatcttttaaatggatat
gatgttattggtgttttacctactggatttgggaaatccttgttgtttcatttgttggca
gactttttgccaagaaagagtgtccaaaatatagtattggtggtgtgccctcttaattct
atcatagaggaccagttgaaagttttagaagtgagaggtattggtgctggggtgcttcat
ttggagcaaacagttgtgcctgaaaaattgttttcgtgtggtgagaatggtgagcctgaa
ataccaatttcaattaaaaatggcgaattaaaactagtatttgctcacccagaatctctg
cttagtgtcagaggacgagaattgctaaaaagttctgtttaccaagaaaatgttgtcagt
tgtgttatagatgaagcacattgtgtaagcatgtggggtgaggatttccgaaaaattttt
agcgagttgtctacgttaaaggcacttttcccagatgctgttacattggctctaaccgct
actgctacaccagacactgtagaatatttgattaaatcgctcgcccttattacgtataaa
gtcattgctgtatcgccaaatcgaaaaaatgtgtatttaaacatacaaagacgcccaaac
tctaacttgggtttgaaaggatttgaagttattctcaaaccgttggctaaaaaattaaac
gtgcaaagagaacactatcccatgacaataatttacatgcatttaagatattgtgggtat
gggtacaaattatttgaaaatgttataagaaatcattatgttggtgacaatatttgtcct
agagcaagattgtttgcacagtttcatgcttcttgtactacacaaatgaaagaggatata
ttgaaggagttaaagaagtcagattcacgaattagagtagtatttgctacaactgctcta
ggtatgggtgttgatgctccaaatatatctaatattattcacataagtcctccatcaaca
ttagagtcatttgtgcaagaaattggaagaggaggaagaaatggtgtagcttgtgattca
cttttatatgtcaacaattctgatttggcatctaagtatataagtgattcaatgaaaaaa
tactgtgtatgggatagatgtctcagagtatttttgctaaactattttggatttaagagt
aaaactcagattaactgttgcaagaactgtaatgttggtgctgattctgcaattgatatc
aaattaaacgcacttgacgacaataagaagatagcacgcaacatagttggggctgatatg
gagatgcttaaagtagaattgttaaaaacggttgaagatatcaattctgatgaaaacgtg
atgtttcctttccacagtaaaattaacactaacattgtaaatgaaatcctgagagaatta
gcatttatttcttgtgaatcagacttactttctatgtttggtatttggaatgaaaggtgt
tctaaggaattatatgctttaatagacaaatatgcacctaaaatagtttag
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