Hydractinia symbiolongicarpus: 130624113
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Entry
130624113 CDS
T09218
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03040
Spliceosome
hsy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130624113
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130624113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsy03041
]
130624113
04121 Ubiquitin system [BR:
hsy04121
]
130624113
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130624113
Enzymes [BR:
hsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130624113
Spliceosome [BR:
hsy03041
]
Complex B
Other components
Prp19 complex
130624113
Complex C
Prp19-CDC5 complex
130624113
Ubiquitin system [BR:
hsy04121
]
Ubiquitin ligases (E3)
U-box type E3
130624113
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
130624113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
eIF2A
Beta-prop_DCAF4
U-box
Beta-prop_WDR75_2nd
PROPPIN
B-prop_COPA_B_2nd
Beta-prop_Nup120_160
RMC1_N
zf-Nse
Pullul_strch_C
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_SPT8
Ge1_WD40
ATG16
Motif
Other DBs
NCBI-GeneID:
130624113
NCBI-ProteinID:
XP_057295665
LinkDB
All DBs
Position
13:complement(14967556..14988294)
Genome browser
AA seq
506 aa
AA seq
DB search
MALVCSISGEVPEHPVISPVSKHIFEKRLIEKFISENGTDPITGDSLSESELIELKTTPL
TKPRPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQAARQELSHALYQHDAACRVIARL
TKEATAAREALATLKPQAGASVTSGQVSHVSGATKIDDTDIVEPAEVGMSDEVLQKLQDK
ATELTSERRKKGKKAPEDLTPADDLRSFKQIATHPGLHSASVPGILALDLQDQDTSKAIT
GGMDKTAVVFNKENEQVVATLRGHTKKVTSVIYHPREEIAITASADNTVRVWSIPNSSCA
YVIKAHDAAVTGLSLHATGDYVLTCSSDQYWAFSDIQTGKILCKNISDPNASHGLTCAQL
HPDGLIFGTGTTDSVVKIWDLKERENVANFPGHSGPITSIAFSENGYYLATSADDSVVKL
WDLRKLKNFKTITLDESDEIKSLCFDKSGNYLAVAGSNIQLYVVKQWELLKKLTDHTGLV
TSVKFGKSASFIASASLDRNIKYFAR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgtctgttcaattagtggtgaagttcctgaacatcctgttatttcaccagtt
tcgaaacatatatttgaaaagcgtctcattgagaagtttatctcagaaaatggaacagac
cccataactggtgatagtttatctgaatccgagctcatagaattgaaaaccactcctttg
acaaaacctcgtcctccatcagctacaagtattcctgccatattaaaagctcttcaagat
gaatgggatgctgttatgctccacagtttcacattacgacaacagcttcaagctgctaga
caagaactttcacatgcgttgtaccaacatgatgctgcttgccgtgtcattgctcgattg
actaaagaagctacagctgcaagagaagctcttgcaacactgaagccacaagctggtgct
tctgtcacttctggccaagtatcacatgtgtcaggtgcaactaagattgatgacacagac
attgtggaacctgctgaagttggcatgtctgatgaagtgctacagaaattacaagacaaa
gctacagaactcaccagtgagagaagaaagaaaggaaagaaggccccagaagatttgaca
cctgctgatgaccttcgttccttcaaacagattgcgacgcatccaggacttcacagtgct
agtgttcctggcatcttggctttggacttacaggatcaggacacttcgaaagcaataaca
ggtggtatggacaagactgcggttgtatttaacaaagaaaatgaacaggttgttgccact
cttagaggacatacaaagaaagtcacgtcagttatataccatccgagagaagaaattgca
attactgcatctgctgacaatactgttcgtgtgtggagcatacccaatagctcttgtgct
tacgtcataaaggctcacgatgctgcagtaactggcttgagcttacacgctactggtgat
tacgtgttgacatgttccagtgatcagtactgggccttctctgatattcaaactggtaaa
atcctctgcaagaacatctcggatccaaatgctagccatggtttaacttgtgctcagcta
catcctgacggtttgatctttggaaccggaacaactgacagcgttgtgaaaatttgggat
ttgaaagaacgagaaaacgtggcaaacttccctggacattctggacctattacgtcaatc
gccttctctgaaaacggatactacttagcgacaagtgctgatgattccgttgtcaaactt
tgggatttaagaaaactaaagaacttcaaaacgattaccttggatgaaagtgatgagatc
aagtctttatgttttgacaaaagtggaaactatctagcagtagcaggttcaaatattcaa
ttgtacgtggtgaagcaatgggaactgctgaagaaactcacagatcatactggactcgtg
acgtcagtgaagttcggaaagagcgcttcatttattgccagcgcgagtttggatagaaac
atcaagtatttcgctcgctga
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