Hydractinia symbiolongicarpus: 130625691
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Entry
130625691 CDS
T09218
Name
(RefSeq) regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03013
Nucleocytoplasmic transport
hsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130625691
03015 mRNA surveillance pathway
130625691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130625691
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130625691
mRNA cycle factors
P-body specific factors
130625691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
130625691
NCBI-ProteinID:
XP_057296777
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All DBs
Position
14:4830619..4846692
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AA seq
1234 aa
AA seq
DB search
MVKDDYNKQGGKGNERSHRYSVERKTKNAFGKTSNSDESKGNKGELDETKNKEGEKPKDV
EEKPVEDKQQDESEKENNNEEEMENIRLEEEKKLASDTKSTAEERINNRMDLRKKNTDAP
QNRPAEGFFKQLESSMKKNTAFVKKLRSINEQQRESLIAEFNALNLSKFIQEAVTSIVEA
KLKVADVSAAAYICSLFHQRYADFTSLFKRSFIKLFDVINCKEEEKAGNISRLRTALRLL
GELVLDGFYNSLDEGVQILLNTIQAVVTADKNSFTYAPIILTTVRHCGEDLAGIVPRKYR
CWKDKLNIDIPMLKVLTPDQQSMFLCLFKEYYESMAQYIVNMHKDLQNRDRQNRQTIGLK
GELPVERKEAFEKAQKVFDKLLSSTTSLAELLDEDMPDLPEDQLEEREELGTVNIFTPVR
GVEYDSENGLWEDEDTRTFYENVKDLKVLVPQILFKETPTSSNQKKNQKHDKKKTKERKL
RVDLNVDDSMDYNDYEELDDNYEQEIVGDDGDDDEPVVVGMAAVAEAYFQKLPTCVNRDF
IDQAAEEFIMKLNTKGNRKKLVRTLFTVNRVRLDLLPFYARLVSTLSPCLPDIATDLVWL
LKGSFRSHLRKKDQMHTESKVKTVRFIGELTKFKVCPKAEALYCLKLLLDNFTHHNIDMA
CNLLETCGRFLYRSPESYPRMSALLEQMMRKKSVQAFDSRYSTMIENAFYYCNPPERQKV
QKKVRPPIHEYIRKLLYKDLTKTTTEKVLRQIRKLPWNDEKARDYVVKCMTHVWNVKFNN
IRCLANMLSGLAEYHDDVAVHVIDGVLENIRLGMETNIFRDNQRRLSSIKYLGEMYNYQL
IDSDIIFQNLYLLITFGGSLEMSLSTLDPPEHLFRIRLVCTVLETCGQYFDRGTSKKKLD
CFLVYFQCYIWQKKESGYWNDQLPFPRDVDYMIVDSIEGLRPKLNFYTSLEEANAAVVEL
NKEYEDKIKALAVVNDESESAELNNSVHSNSSLPSSPYAESPIARSPGVHSQSSQDEEEI
VSGIESGNEDDEGGNELQNGEQEDMFLMENEDEVHLRETPKYVDCHEDDIFRKDFDRIMG
DSITERLHDNMKIPNVDIAIPMNLKGKQKKKNNTNDTNDSNDNNSVNFVLMMKKNNKQVL
RDLQIPVTSDLAANIRNKQLAERAEHEEMKRLVLDYNQRQEEESYNELMSQFRTPKRGGG
HYRQQSSGNKNQRGGSRLRSRDAEQHLFSPSNRR
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaagatgattacaacaagcaaggtggaaaaggaaatgaaagatcgcacagatat
agtgttgagcgaaaaacgaaaaatgcttttgggaaaaccagtaactctgatgagagtaaa
ggcaacaaaggggaactagacgaaacaaaaaacaaggaaggtgaaaaacctaaagatgtg
gaagaaaagccagttgaagacaaacagcaggacgaatcagagaaggaaaataataatgaa
gaggaaatggaaaatatacgattggaggaagaaaagaaattagcaagtgacactaaatca
actgctgaagagaggataaacaatcgtatggacctccgaaagaaaaacacggatgctcca
caaaacagaccagcagaaggattcttcaagcaactagaatcatcaatgaaaaagaataca
gcatttgttaaaaaactgcgatcaattaatgaacaacaaagagagtcattaattgccgaa
ttcaatgccttgaacttgagtaagtttatccaagaagctgtaacatcaattgttgaagca
aaactaaaggttgctgatgtcagcgctgcagcatatatttgttcattatttcatcaacgt
tatgctgacttcaccagcctttttaagcgctcatttataaaactttttgatgttattaat
tgtaaggaagaagaaaaggcaggtaacatatcacgcttgcgcactgcattaagattactt
ggtgagcttgtccttgatggtttttacaattcgcttgatgaaggtgttcaaattcttctc
aacacaatacaagctgttgtcacagcggacaaaaactcatttacatacgctccaatcata
ttaacaaccgttagacattgtggtgaagatttggcagggattgtcccacgaaaatataga
tgctggaaagataaattaaacatagacattcccatgcttaaagtactcaccccagaccaa
cagtctatgtttttatgcttgtttaaagagtactacgaaagcatggcacaatatattgta
aatatgcataaagatttacaaaacagagaccgtcaaaatcgacaaaccataggattaaaa
ggtgaattaccagtagaacgcaaagaagcttttgagaaagctcaaaaagttttcgataaa
cttttatcttctactacatctttagctgaactgcttgatgaagatatgcctgacttgcca
gaagatcaactggaagaaagagaagaacttgggactgtcaatatttttacaccagttaga
ggtgttgagtatgattctgaaaacggactatgggaagatgaagatacaagaacattttac
gagaacgtgaaagatttgaaagtattggtacctcagattctgtttaaagagacaccaaca
tcatcgaatcaaaagaaaaatcaaaagcatgacaaaaagaaaacaaaggaaagaaaactt
cgagtagatttaaatgttgatgattctatggattacaatgactacgaagaacttgacgat
aattatgaacaggaaattgttggtgatgatggagacgacgatgagcctgttgttgttggc
atggcagcagtagcagaagcgtactttcagaagctacctacatgtgttaatcgggacttt
attgaccaagctgcagaggagtttataatgaaactaaacactaaaggaaatcgtaaaaaa
ttagttcgtactttgtttacagtcaatagagtaaggctagatctactccccttctatgca
agacttgtctctacactttcgccttgtttacctgatattgctacagatttagtgtggttg
ttaaagggaagtttccgttcacatttacgaaagaaagatcaaatgcatacagaatcaaaa
gtgaagacagtcagatttataggtgaattgacaaagtttaaagtttgcccaaaggcagaa
gcactttattgtttaaagctgctactggacaattttactcatcacaatattgacatggca
tgtaatttattggaaacatgtggtagatttctttaccgttcaccagaatcctatccacgg
atgtcagctcttcttgaacaaatgatgaggaagaagtctgttcaagctttcgatagccgc
tattcaaccatgattgaaaatgctttttattattgcaacccaccagaacgtcaaaaggtt
caaaaaaaagtccgacctcccattcacgagtatattcgaaagcttctttataaagatttg
acaaaaacgactacagagaaagttctccgtcaaattcgtaagctgccatggaatgatgaa
aaggctagagactacgtggtcaaatgtatgactcatgtttggaatgtcaagtttaataat
atcagatgtttagctaatatgttgtctggactggctgaatatcatgatgacgtagctgtc
catgtgattgatggagtgttagaaaatatacgtcttggaatggagaccaacatatttcgc
gacaaccaacgtcgcctgagcagtatcaaatatcttggtgagatgtacaactatcagctc
atcgacagcgatatcatctttcaaaatttatacctgcttataacatttggtggaagtctc
gaaatgagtttgtccacgcttgaccctccggagcatttgtttcgtattcgtttggtgtgc
acagtactcgaaacttgtggtcagtactttgatcgcggtacatccaagaaaaagttggat
tgttttttggtctatttccagtgctacatatggcagaaaaaggagagtggttactggaac
gaccaattacccttccccagagatgttgactacatgatagttgatagcatagaggggttg
agaccgaaattgaatttttacacatcactagaagaagcaaacgctgctgttgttgagttg
aacaaagaatacgaagataaaattaaggcattggctgttgtaaatgatgaaagtgaatct
gctgaactaaacaactcagtgcactcaaattcaagcctaccttcaagtccttatgcggaa
tcccctatagcgcgttctcctggagttcattcccagtcttctcaggatgaagaagaaata
gtgtctggtattgagtctgggaacgaagatgatgaaggtggcaatgaacttcaaaatgga
gaacaggaagatatgtttcttatggagaatgaagacgaggtacatttacgtgaaacacca
aaatatgttgattgccatgaagatgatattttccggaaagattttgatcgcataatgggc
gatagcatcacggaacggttgcatgacaatatgaaaatacccaacgttgatattgctatt
ccgatgaatctaaaaggtaaacaaaagaagaagaacaatacgaacgacacaaacgactcg
aacgacaacaacagtgttaacttcgtgctcatgatgaagaagaacaacaaacaagtgctg
cgagatttgcaaatccctgtcacgtcagaccttgctgctaacatccgaaacaaacagtta
gcagaacgagcagaacacgaagaaatgaaacgacttgtgcttgattataaccaacgtcaa
gaagaagagtcgtataacgagttgatgtcgcagtttcgaactccgaagagaggtggtgga
cattatcgtcaacaatcctctggaaataaaaaccaacgtggaggatctcgattaagatca
cgtgatgcagaacagcatctgttcagtccctctaacagacgctag
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integrated database retrieval system
