Hydractinia symbiolongicarpus: 130628825
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Entry
130628825 CDS
T09218
Name
(RefSeq) uncharacterized protein LOC130628825
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130628825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsy03000
]
130628825
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130628825
04121 Ubiquitin system [BR:
hsy04121
]
130628825
Enzymes [BR:
hsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130628825
Transcription factors [BR:
hsy03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130628825
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130628825
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130628825
Ubiquitin system [BR:
hsy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130628825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
zf-RING_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
130628825
NCBI-ProteinID:
XP_057297826
LinkDB
All DBs
Position
15:complement(11384069..11397145)
Genome browser
AA seq
1090 aa
AA seq
DB search
MSAADAPDCPLCMETFEIDDLHFYPCTCGYQICRFCWHRIRTDENGLCPACRKTYTEDPA
MYRPLSQDEIQKIKKERKQKEAQHKQKISDNRQHLSNIRVIQRHLVFVVGLSNKMADADV
LRRPEYFGKYGKIVKIVINPNTNYAGPQGPSASAYITYTREEDALKAILAINNMQPPLKI
RASLGTTKYCTHYLRNMQCPKADCMYLHDVGDNAASFTKDDMQAGKHQLFEKDLLDNYVA
SVQNQRMLRKSLSECSEPDPVETHSQEDWNEEIDNADSLLPSQASWGTAKEDKAINDYTS
YPEAPSTEKTSPPLSTPQTLPTTTHVLTTTHIATTTVAHSVMTDSKPIDTPLTKSTFSTG
WATSSDSVAQDPAPNDANNFSWPGISDLGLSDLKINASDDDLGFDPFIESKSGLEDLMAT
EKQQGVSLQPQPSFSWDSFWPSNYNPNQNAMSLINSYSLFGASQQMPNPRMMQFRPPAVN
PYQQNPLAPPNTANPYRFITPQQQQLQRFPQQFPGVHPLQQQQQPNPQFVNQFQMPQPVT
PQQQKMVAPVVPPSTVANTGSTENKNWQDGLRALLPNINISFANQQLEQQQLKAAWNTDE
KGQETENLSSPPPGFPGFISANKNGQRPPPPPGFSKDVFSPTSQPPPGLLNGSPSLPIST
PSTSNASTSASSSHEDPSILWSKVLSDNHKEIETANMAFPLPGETISQASLIDPLASNRV
QLQQPLSSSWNAIVSGNQPAKQSAKQEEAFGMKDRRPLSVSAKENVENKPQKPSPIFGCQ
HKQAIKKPTAHVKPLKCNNDGFTTVHSSRQQSHTQSVDTHTGSRVSELDDFSTDFPIPAG
NINTTDYPVAMTSSKAGAKKKKKKNKEPVEQISELIVGRVEAERPAVILDEERPKKGGKT
KKKNTVKTSPPLQRKSSLPKYEDQRGKEAAAPTIRILKSDGNNHSGNQTPPVQVTATNEG
APKAVQDHEIVSRLTESTEKLLKNVLFETEAIKINTEQISKDLKSALEKCKESSLSLSDL
EKINLLLTPAKLAAGELDESDLVDTTDLERQVESARREAKMLEARLNDVIRKNMASELET
LKRNTTSHAQ
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagcagatgcaccagattgtccattatgcatggaaacatttgagatagacgat
cttcatttttatccatgtacttgtggttatcagatttgtcgtttttgttggcaccgtata
cgtacagatgaaaatgggctttgtccagcttgtcgtaagacatacacagaagatcctgca
atgtaccgaccgctgtcacaagatgaaatacagaaaataaaaaaggaaagaaagcagaaa
gaagcacaacataagcagaaaatatctgataacagacaacatctatccaacatcagagtg
atacagagacatttagtgtttgtggtgggtttatctaataaaatggcagatgcagatgtt
ttaagacgaccagagtattttggaaaatatggcaaaatcgtgaaaattgtgattaatcca
aacacaaactatgctggtccacagggtccaagcgctagtgcatatataacttacacaaga
gaagaggacgcacttaaagcaattttagcaatcaacaacatgcaaccaccattaaaaata
agggcgtcattgggaacaacaaaatattgcacacattaccttcgaaatatgcaatgtcca
aaagcagattgtatgtatttacacgatgttggcgataacgctgcaagtttcacgaaagac
gacatgcaagcaggaaagcatcagttgtttgaaaaagacttactcgataattatgtagca
tccgtgcaaaatcaacgcatgttgcgaaaatctttaagtgaatgtagcgaacctgaccct
gttgaaacgcactctcaagaagactggaacgaggaaattgacaatgcagattcactgcta
ccgtcgcaggcatcttggggaacagcgaaggaggacaaagctataaatgattacacatcg
taccctgaggcacctagtactgaaaaaacatctccaccattatctactccacaaacactt
ccaactaccacccatgttttaactaccacccatattgcgacaaccactgttgctcattca
gtgatgactgatagcaaacctatagatacacccctaactaaatccactttctctacaggt
tgggcaacatctagtgatagcgtagcacaagatcctgcacccaatgatgcaaacaacttc
tcttggccaggaataagcgatttaggtttaagtgatctaaaaatcaatgcaagtgatgat
gatctaggttttgatccatttattgaaagcaagtccggtctagaagatttaatggcaaca
gaaaaacaacagggcgtttctttgcaaccgcagccatcatttagttgggactcattttgg
ccatcaaattacaatccaaatcagaacgccatgtctcttatcaactcctactcacttttt
ggtgcttcacaacaaatgcctaacccacgtatgatgcagttccgcccacctgcagtgaat
ccgtatcaacaaaatcccttagctccaccaaacacagctaacccttaccgatttataaca
cctcagcagcaacagttgcaaaggttcccacaacaatttccaggcgtgcaccctctgcaa
cagcagcagcagccaaacccgcagtttgtgaatcagtttcaaatgccacaaccggttact
ccacaacaacaaaagatggttgcaccagtagtgccaccctccaccgttgctaacactgga
agtactgaaaataagaattggcaggatggccttcgagctctgttgccgaatataaatatt
agttttgcaaatcaacagttagagcagcagcaactgaaagccgcgtggaatactgatgaa
aaaggtcaagagacagaaaatctttcaagtcctcctcctggatttcctggattcatctct
gctaataaaaatggtcagcggccaccgccacctcctggtttcagtaaagatgtattttct
cccacctctcagccaccacctggtctgttgaatggctctcccagtctacctatctctaca
ccgtcaacttcgaacgcgtcaacatctgcatcatcttcacatgaggatcctagtatactg
tggtcaaaagttttatcagacaatcataaagaaattgagacagcgaatatggctttccct
ctcccgggtgaaactataagtcaagcaagtttgattgatccattagctagcaaccgtgtc
cagctacaacaaccattatcttcatcttggaacgccatcgtcagcggcaaccagccagca
aaacagtcagcaaaacaagaagaggcgttcggtatgaaagaccggcgaccactttcagtc
tctgcgaaggagaatgttgaaaacaaacctcaaaagccttccccaattttcggatgtcaa
cataaacaagccataaagaagcctactgcgcatgtcaaaccactcaagtgtaacaatgat
ggattcacaactgttcatagttcaagacaacagtctcatacgcagtccgtagatactcat
acagggtcgagagtcagtgaacttgatgacttcagtacagattttccgattccggcaggt
aatatcaatacaacggactatcctgttgctatgacttcgtctaaagcaggcgctaaaaaa
aagaaaaagaagaataaggagccagttgaacaaatttcagagttgattgtaggacgcgtt
gaagcagagcgtccagctgttatattagacgaagaacgtccgaaaaaaggcgggaaaacg
aagaaaaagaacacggtaaaaacatcaccaccactgcaaagaaagtcatctctaccaaag
tacgaagatcaaagaggcaaagaagctgctgcacctactataagaattttaaaaagtgat
ggaaataatcacagtggaaaccaaactcctcctgttcaggtgacagctactaacgaaggg
gcaccaaaagctgtgcaagatcacgaaatcgtcagcagacttactgagtctactgaaaag
ctactgaagaatgttttatttgaaacggaggctatcaaaatcaacaccgaacaaatttca
aaagatttaaaaagtgcattagaaaaatgcaaggagtcttcgttatctttgtctgatttg
gagaaaattaatctcctactgacacccgctaagttagctgctggtgaactcgatgagtca
gatctagttgataccactgatttggaaagacaagttgaatcagcaaggcgagaagcgaaa
atgttggaagcccgcttaaatgacgtcattcgcaaaaacatggccagtgaattggaaact
ttgaagcgtaacacgacaagtcatgcccagtag
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integrated database retrieval system
