Hydractinia symbiolongicarpus: 130628983
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Entry
130628983 CDS
T09218
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130628983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130628983
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130628983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
SRPRB
Motif
Other DBs
NCBI-GeneID:
130628983
NCBI-ProteinID:
XP_057298041
LinkDB
All DBs
Position
15:complement(4790788..4819932)
Genome browser
AA seq
671 aa
AA seq
DB search
MSRHRNIRNLSLEDELSEDVYGRSLDDTDHYCVSPGTEAEFMYRRDKSHTLSSFIGNDAK
IEEEKGEFDQEDFYDSVDVEYKRPVLDPLNQGKLQSCIEHLEDILGDSIHEKTIVEAILA
HNFDVDKALNQILNKGSSTSPPNPPKSTFNTEYFTSNKSYIVTTPKLEKSSKTPSPSLKE
KNPFNRKTPSDDLKPSLSLTTKTPSRTQTSEDSLDGTPTSSKTPKASKNREVIDISTELK
KRQDGRDLINLIVIGHVDAGKSTLMGHLLYNLGNVSKKVMHKNEMESKKSGKGSFAYAWV
LDETEEERTRGITMDVAMTMFETKTKMVSLMDAPGHRDFIPNMIQGTAQADVAILVVDSR
PGEFEAGFEAGGQTREHAILARSLGVGQLVVAVNKMDSISWSKDRYDDIVIRLKTFLTKQ
AGFRESDVYYIPCSGLSGENLTERSNEDKLISWYKKDCLVELIDQFRAPDRPIDKPFRFC
VADVYKGQGSFVVAGKVESGSVQNGDKIMLMPATESGIIKSLATRDEPVKFAAAGDHITA
SIHGVDMAHVSVGCIICSVTSPIKVTTRIVTRIVVFNTQVPITKGFMVVFHSQNLSEPAT
VSKLASILNKNSGEVIQKRPRCLTKHMNAVIEIKFPRPICVELYRDNKVLGRFMLRYSGN
TIAAGVITEVK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggcatagaaatattcgcaaccttagtttggaggatgagttatcagaagatgtg
tatggtcgctcacttgatgatacagatcactattgtgtatcgccaggaacagaggcagag
tttatgtacagaagagataaaagccataccttgtcttcctttatcggaaatgatgccaaa
attgaagaggaaaaaggagaatttgatcaagaagacttttatgacagtgttgatgttgaa
tataaaaggcctgtactagatcctcttaaccaaggaaagctacaatcttgtattgaacat
ctggaggatatcttaggtgactcaatccatgaaaaaactattgttgaagccattcttgca
cataactttgatgttgacaaagcgctgaaccaaatcttgaataaaggctcttctactagt
cctccaaaccctcccaaatcaacttttaatactgaatattttactagcaacaaaagttat
attgtgacgactccaaaattagagaagtcatcaaaaacaccctcaccgtcattaaaagag
aaaaatccatttaacagaaaaacaccaagcgatgatttgaagccatccctaagcttaacg
acaaagactccatcccgaacacagactagtgaagactcacttgatggaactccaactagt
tcaaagactcctaaagcatccaaaaacagagaggttattgatatttcaacggaactgaaa
aaacgtcaagatggaagagacctgattaatttaattgtaattggtcatgttgatgcgggt
aaatcaactttgatgggtcatttactttacaatcttggcaatgtttcaaagaaagtcatg
cataaaaacgaaatggaatcaaaaaagtctggaaaaggatcatttgcatacgcatgggtg
ttggacgaaacagaagaagaaagaactagaggtattacgatggatgttgctatgacaatg
tttgaaacgaaaacaaagatggtaagcttaatggatgcacctggacatcgagattttata
cccaatatgattcaagggactgcacaggcagatgtcgcaatccttgtagtcgattcaagg
cctggtgagtttgaagcaggctttgaagctggtggtcaaacgcgtgaacatgcaatcttg
gcaaggtcgttaggtgttggccaacttgtagttgctgtaaataaaatggactctatcagt
tggtctaaagatcgttatgacgatattgtgattcgtctaaaaacttttctcacgaaacaa
gctggattcagggaatcggatgtctattatataccatgcagtggattaagtggtgaaaat
ttgacggaaagatcaaacgaagacaagctgatatcatggtataagaaggattgtttggtc
gagttaatagatcagtttcgcgcacctgaccgtcctatagataaaccatttcgattttgt
gtggccgatgtatacaagggtcaaggttcattcgttgttgctggtaaagtggaatcaggc
agtgttcaaaatggcgataaaattatgctgatgccagctactgaatctggtattatcaaa
agcttagcaacgcgagacgagcctgtgaaatttgcagcggctggtgaccacataactgcg
tccattcatggagtagatatggcccatgtcagcgttggatgcatcatatgcagtgtgacg
tctccaatcaaagtaacaacgcgaatagttacacgtattgtggtgttcaacactcaagtt
cccatcacaaaaggttttatggttgtctttcactcacaaaatttaagtgaaccagcgaca
gttagtaagttggcaagtatcctcaataaaaacagtggagaggtcatacagaagagacca
agatgtctgacgaaacacatgaatgctgtgattgagatcaagttcccacgaccaatttgt
gtggaattgtatcgtgacaacaaagtcttgggacgtttcatgctgaggtattctggaaat
acaatcgctgccggtgttattaccgaggtgaagtga
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