Hydractinia symbiolongicarpus: 130630083
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Entry
130630083 CDS
T09218
Name
(RefSeq) uncharacterized protein LOC130630083
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130630083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130630083
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130630083
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130630083
Messenger RNA biogenesis [BR:
hsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130630083
DNA repair and recombination proteins [BR:
hsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130630083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
DUF4460
Motif
Other DBs
NCBI-GeneID:
130630083
NCBI-ProteinID:
XP_057299464
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All DBs
Position
2:complement(28587760..28590337)
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AA seq
563 aa
AA seq
DB search
MQILRIEFLNFTSTSKITDDAMEPFAILEKIQRSLECRNFPDLNFKPKQVKCLESIVRGQ
DVIGVFPTGYGKSLIFQLLPDVMRNKDEKSSIVIVITCLNAIMEDQVNFLKKVGMTCYIL
RDLNFEENAVQTLFEDICLSDKTEDVLPSFVLDGHCDFLFCHPEAILSERGRTLMKTKIY
QKNVKNVSLMRLTAWTPGKGKKFRKEFENLGAMRAFFREVPFIALTATATEKTLAKIKHI
LGMKTPTIISVNPNRKNVYMCKEKRKVGEEGIENIILPLAKELKSLKKSFPQTIIYCGLR
FCGYIYKLIKNVLKEHMYVENITNPSNCLIVQFHAPQTKSMKNEILLEVAKEVSNIRVII
ATSALGMGVHAPYIEQIFHISPPSTIEDYMQQFGRAGRRGQEALARLYYTGHDISSRRLK
QNKVDEHMVNFCTTTQCLRKVLMIHFGYHYQPQDQCCSNCDSSLLKEPKKEERIKYREVS
DESLKKLSDELDNILADHDQATHDAAMEFYNIVDTGNLAEKFSEIIINIEYVNDVESLLE
YQLWEEFVSSRVFKVIEKYTTLK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcagattttaagaatagaatttctaaattttacatctacgtcaaaaataacagatgat
gcgatggaacccttcgcaattttggagaaaattcaaagatctctggagtgtcgaaatttt
cctgaccttaactttaaacccaaacaagtcaagtgcttggagtccatagtaagaggacag
gatgtcattggggtgtttccaacaggatatgggaaatctttaatttttcaactgttacca
gatgtcatgagaaacaaagacgaaaaatcttcaattgtcattgtaatcacttgtttaaac
gcaattatggaagatcaagtgaattttctgaaaaaagtaggaatgacttgctacatccta
cgtgacttaaattttgaggagaatgctgtacagacgttgtttgaggatatctgtctgagt
gataaaacagaagatgtcttaccatcatttgtattggatggtcattgtgacttcctattt
tgccatccagaggctatattgagtgagagaggaagaactttgatgaaaacgaaaatttat
caaaaaaatgtcaaaaatgtgtcattgatgaggctcactgcttggacacctggtaaggga
aaaaaatttcgcaaagaatttgaaaacttgggagcaatgcgagctttttttagagaggta
ccttttatcgcacttacagctaccgcaacagaaaaaacactggctaaaataaaacatata
cttggaatgaaaaccccaacaataatatctgttaatccaaacagaaaaaatgtatacatg
tgcaaagaaaagagaaaagttggtgaagaaggtattgaaaatatcatcttgccacttgca
aaggagctaaaatcactaaagaaaagttttcctcaaactattatatattgtggattaagg
ttttgtgggtatatatacaagttaataaaaaatgtattaaaggaacacatgtatgttgaa
aacataacaaaccctagcaattgtttaattgtgcaatttcacgcaccacaaacaaagtca
atgaaaaacgaaattctccttgaagttgcaaaagaagtttcaaacattcgcgttataata
gcaacttctgcgcttggtatgggtgttcatgcaccctatatcgaacaaattttccatata
agtccaccaagtaccatcgaagactatatgcagcaatttggacgggctggtcgaagaggg
caagaagcattggcaagattgtactataccgggcatgatatcagcagtaggcgtttaaaa
caaaataaagttgatgaacatatggtgaatttttgtactacgacacaatgccttcgtaaa
gtattgatgattcactttggatatcattatcaaccccaggatcaatgctgtagcaattgt
gattcttcactcttgaaagaacctaaaaaagaggaacgtattaaatatagagaagtatca
gatgagagtttaaagaaactatcagatgaacttgataatatactggcagatcacgaccaa
gccacacatgatgcagccatggagttttataacattgtggatacaggaaacttggctgaa
aaattttcagaaattattattaacattgagtatgtcaacgatgtggaaagcttgttagaa
tatcagttgtgggaggaatttgttagtagcagagtttttaaagttattgagaagtatacc
acactgaagtaa
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