Hydractinia symbiolongicarpus: 130630645
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Entry
130630645 CDS
T09218
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03013
Nucleocytoplasmic transport
hsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130630645
03015 mRNA surveillance pathway
130630645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130630645
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130630645
5.6.2.5 RNA 5'-3' helicase
130630645
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130630645
mRNA cycle factors
Common to processing body (P body) and stress granule
130630645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
SLFN-g3_helicase
ATPase
SRP54
DUF269
NACHT
AAA_22
AAA_25
PhoH
Motif
Other DBs
NCBI-GeneID:
130630645
NCBI-ProteinID:
XP_057300202
LinkDB
All DBs
Position
1:3538202..3550148
Genome browser
AA seq
1145 aa
AA seq
DB search
MSTVESQSYGPASQTLTFLETEEADFGADTQGSEFEFNEFTLPSQTQTQSQASQLDQASQ
PLLNGFPENSTTISLKKGGQEHELLIRKHDKDKKEVKEKDEESVVKDLSKGVEDLNFEED
EEENFADKELPPHACRYCGIHDPASVVLDNTDKKWFCNGRGNTSGSHIINHLVRAKHKEV
SLHKDGPLGETQLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCAQQSNKQDTNWDQSQ
WQPLINDRCFLSWLVKVPSEQEQLRARQVSAVQINKLEELWKDNPEATLEDLEKPGVDEE
PQTVLLRYEDAYQYQNIFGPLVNHEAEYDKKLKESQSQDNIVVRWDIGLNKKRIAYFNFP
RSDGEMRLMQGDELRLRYNGEMRKPWSGEGHVIKLPNNFGEEVGLELRKNDGVPTECTHH
FSVDFIWKSTSFDRMQYAMKTFAVDETSVSGYIYHKLLGHEVEEQNVKCSLPKRFSAPGL
PELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSASIVYHLAKQGLGQVLVCAPSNIAVD
QLTEKIHKTGLKVVRLAAKSREAIDSPVSHLALHNQVRNMDSMPELQKLQQLKDDQGELS
SSDEKRYKTLKTSAEKELLQHADVICTTCIGAGDPRLRIAKLRFRCVLIDESTQATEPEC
MVPIVHGTKQLVLVGDHCQLGPVVMCKKAASAGLSQSLFERLVVLGIRPIRLQVQYRMHP
ALSEFPSNLFYDGTLQNGVTVAERLQAGVDFPWPVGDKPMFFYATTGQEEISSSGTSYLN
RTEAATVEKIATRFLRAGIKPQQMGIITPYEGQRAYIVSYMQFSGSLHATLYQSIEVASV
DAFQGREKDYIIMSCARSNEHQGIGFLKDPRRLNVALTRSKYGLIIVGNPKVLSKQPLWN
HLLNDYKEKRVLVEGPLNNLKESAIQFSKPRKLVNRTNPGGRFMTNTMFDAREALIAPGM
YTNRPVRPHVDPVMDSYYRTHDRMNFFPPGPDQARNTFAANIPIPVGMFMSPMPPPTYQF
NHQAMVRPGQQHRQRMPMGNKMNQKHGQYNNRATSHDLSQGPLSQGPLSQGPLTQGGMSQ
PMHPLSQPLSQPELSQDSYLGDDFQLKSQADQVLSQDSSYQGDRGGYHPFSSQAEYSQPM
YNSQY
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagtggaatcgcagagttatggcccagcgtcgcaaactctgacatttctagag
actgaggaagctgattttggtgctgacacacaagggagtgaatttgagtttaacgaattt
accttaccatctcagacacaaacacagtcacaggcttcccaacttgatcaggcaagtcaa
ccgttgcttaatggtttcccagaaaattctacaactattagcttgaaaaagggaggtcaa
gaacatgaattgcttatacgaaagcatgacaaagataaaaaagaagttaaggaaaaagat
gaagagtctgtagtaaaggacttgtcaaaaggtgtagaagatcttaattttgaggaagat
gaagaggaaaactttgctgataaggaactgcctccacatgcatgcagatactgtggcatt
catgatccagcatcagttgtgttggacaacacagacaaaaaatggttttgtaacggccgt
ggaaacacttctggcagccacattattaatcatttggtgcgtgcaaagcacaaagaagtt
tctcttcacaaagatggaccccttggtgaaacccaattagaatgttacaattgtggttgt
cgtaatgtgtttcttcttggttttattccagctaaagctgactctgttgttgtcctattg
tgcagacaaccctgtgctcaacaaagtaacaagcaagatacaaattgggaccaaagtcag
tggcagccgcttattaatgacaggtgttttctttcatggcttgtcaaagttccctctgag
caagaacagcttcgtgcaagacaagtttctgcggtacagattaataagcttgaagagtta
tggaaggacaatcctgaagctactttggaagatttggagaaaccaggggtagatgaagaa
cctcaaactgttttgcttcgatacgaagatgcttatcagtatcaaaacatatttggaccg
cttgtaaaccatgaggcagagtacgataagaaactaaaagaatctcaaagccaagataat
attgttgtacgatgggacattggtctaaacaagaagaggattgcttattttaattttcca
cgttctgatggtgagatgcgtctcatgcaaggggatgaattaaggttgcgttacaatggt
gaaatgcgtaaaccatggtctggagaaggtcatgtgattaaacttccaaacaattttggt
gaggaagttggattagagctgagaaaaaatgatggagttccaaccgaatgtacacatcac
ttttcagtggattttatctggaaatcaacttcatttgacagaatgcaatatgctatgaaa
acatttgcagttgatgaaacatcagtgagtggttacatctatcataaacttcttgggcat
gaggttgaagaacagaatgtcaaatgttctcttccaaaaagattctctgcaccaggccta
cctgaactgaatcattctcaagtttatgccgtcaagacagttttacaaagaccactcagc
cttatccagggtcctcctggtactggtaagactgtaacttcggcaagcattgtgtatcat
ttggccaagcaaggattgggacaggtcttggtgtgtgcacctagcaacattgctgttgat
caattgactgaaaaaatacacaagactggactgaaagtggtcagactagcagctaaaagt
cgtgaagctattgattcacccgtatcacacttagctcttcacaatcaagtccgtaacatg
gatagcatgcctgaactgcaaaagttgcaacaactaaaagatgatcaaggagaactttct
tcatcagatgagaaaagatacaagacattaaaaacgtctgcggaaaaagagcttttacag
catgctgatgtcatctgtacaacttgtatcggtgctggtgatccacgcttgagaatcgcc
aaacttcgatttcgatgtgttttaattgatgaatctacccaagccacagaacccgaatgc
atggtaccaatcgttcatggaacaaaacagctcgtattggttggagatcactgtcagtta
ggtcctgtagtcatgtgtaagaaagctgctagcgctggcctttcacaatcattgtttgaa
agattagttgtattggggatcaggcctatccgtttgcaagtacaatatcgtatgcaccca
gcgttaagtgaattcccttcaaacttgttctacgatggaacactgcaaaacggagtaaca
gttgctgaaagattgcaagctggtgtggactttccttggcctgttggagacaagccaatg
tttttttatgctacgactggacaagaggaaatatcttcctcgggaacttcgtatttaaac
agaaccgaagctgcgactgttgaaaagattgcaacccgttttttaagagcaggtatcaaa
ccccaacaaatgggtattattacgccttatgaaggacaaagagcttacatcgtctcgtat
atgcaatttagtggttctcttcatgctactttgtatcagtccatcgaagtagccagtgtc
gatgcattccaaggtcgtgaaaaagattacatcattatgtcttgtgcacgttcgaatgaa
caccaaggaattggtttcctcaaggatccacgccgtttaaacgtggcactgacgcgttcc
aagtatggcttgattattgttggtaatcccaaagtattgtcgaagcaacccttgtggaac
cacttgctgaacgactataaggaaaagcgagtccttgtggaaggtcctttaaacaatctt
aaggagagcgctatccagtttagtaagccacgaaaacttgttaaccgcactaatcctggt
ggacgttttatgactaacaccatgttcgacgctagggaagcattgatagctcctggtatg
tacacaaataggcctgtacggccgcatgtggacccggtgatggactcttactatcgaacc
cacgaccgcatgaatttttttccacctggtccggaccaagcaaggaatacatttgctgct
aacattccgatccccgttgggatgttcatgtctcccatgccacctcctacataccagttc
aatcatcaagctatggttcgacctggacagcaacacagacaacgcatgccaatgggaaac
aagatgaatcagaaacatgggcagtataacaatcgagctactagtcatgatctttcacag
ggacctttatcccagggacccttgtcacaaggtcctttaacacaaggtggaatgagccag
cctatgcacccattatctcaaccattgtctcaaccggaactttctcaggatagttacctt
ggtgacgacttccagttgaagtcgcaagccgaccaggtcttgtcacaagattcctcttac
cagggagatcgcggtggatatcacccattctcatcacaagcggaatattcacagcctatg
tacaactcgcagtactaa
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integrated database retrieval system
