Hydractinia symbiolongicarpus: 130636768
Help
Entry
130636768 CDS
T09218
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06237
collagen type IV alpha
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy04382
Cornified envelope formation
hsy04512
ECM-receptor interaction
hsy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130636768
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130636768
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130636768
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsy04147
]
130636768
00536 Glycosaminoglycan binding proteins [BR:
hsy00536
]
130636768
Exosome [BR:
hsy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130636768
Glycosaminoglycan binding proteins [BR:
hsy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130636768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130636768
NCBI-ProteinID:
XP_057302594
LinkDB
All DBs
Position
3:30924835..30937563
Genome browser
AA seq
1723 aa
AA seq
DB search
MNLFTRSLIWIAIVLTTNSYLASSQKCGGTCTQCSNICVGKKGDRGSGGLPGYRGPPGLP
GFPGPEGPIGAPGDKGDSGQPGMVGDAGSRGKVGPPGLPGNPGRHGHPGNDGRQGEPGLP
GCNGTKGDRGPSGPRGRDGTRGDRGLTGDVGPAGEPGDSTATRLKGQKGEPGRDGDQGFT
GDQGNTGEKGNTGAKGNRGRTGGRGLKGEPGFLRNLTYLGVKGDRGPKGIPGPPGIACQT
QVTGNLTTVDAPKGANGTKGQKGEPGSQGPAGKSGEQGDDGEQGATGDRGERGAIGPKGS
KGMIGNTGRSGEQGQRGEIGPVGSRGEKGDTGPKGDRGITGNAGRDGEPGRPATGTPGAQ
GDEGPRGPAGSDGIQGPVGPAGPPGKMGETGPLGPKGNDGEPGPAGPTGENGNPGEPGMK
GPTGPQGPQGEKGNTGIPGNPGLSMSGTPGMDGDTGPRGPPGEQGPTGFPGPAGKPGQVT
TEKGEKIFPGAPGERGPPGLKGVEGEQGKTGRRGEKGAPCTSCPPGPQGERGLPGQAGID
GAPGERGLKGEKGGIGAEGSVGNPGPRGETGPQGNPGEQGRQGANGAKGAAGKDIVINGE
RGDRGEPGQPGSTGPVGFPGAIGPRGDPGSPGPPGENGIQGETGGNGAPGRNGIDGENGA
NGEKGEPGVGERGFRGERGATGPRGLTGPRGPIGQPGKKGEPFPTILKGPPGLPGQKGNT
GQAGPAGAVGPAGPPGVQGEDGQRGEPGNGEKGNKGNQGLRGQPGQVGERGRDGANGIRG
EKGVPGQDGPAGPAGPIKGEKGDSGDPGERGKDGPPGTSAARGLPGAPGLNGTKGEKGDS
GSRGSSGDPGTRGPPGNRGERGEKGDRGESRAGEKGDPGKEGKRGEKGRDGRDGQNGVGI
PGPRGDQGESGNPGVGVRGPPGERGEDGLRGEPGKSGYKGDIGPPGKDGKDGTPGKDGAI
GEPGETGKKGDTGPVGPEGREGERGEPGYVGEKGAKGNSGPRGPPGATSSVQGPKGSRGR
PGQIGEPGRQGEPGGPGPQGEKGDPGIGTEKGNKGDIGPPGPAGEKGDRGERGSEGRQGE
TGREGARGEPGREGPPGAIGDPGLQGRDGPAGPSGPPGEKGSTGFIGKPGDKGEPGPKGP
KGDRGLYERGETGPIGPPGPTGPQGPPGKDYVLSVDKIETDIEKGSKGQRGKQGERGERG
EKGEIGEPGVIGNVGEDGPAGDVGDKGDKGEKGRDGTQGTPGVKGNSGAPGRDGPIGEKG
DVGTPGQDGATGPQGQQGPEGPTGKSGEPGSRGDKGVAGPPGPDCPEVRGPSGERGEKGN
TGNRGKKGEPGPPGESNEIGAKGDPGEPGEKGVEGAAGPQGEDGPSGREGATGPPGPEGF
KGQKGEPGKLGPIGPKGKDAVGTGEKGDKGEKGATGPVGADGPRGEDGSRGPQGPPGPQG
DKGDKGEDGLSGQNGQDGPAGPPGPQGVQGKEGVKGDFGPPGPAGKSGSADFGHYLVKHS
QSTTVPECPTGMAKMWEGYSFLYSQGNGRSHGQDLGQPGSCLSRFSTMPFMICDLENKCT
VASRNDYSYWLSARDEMTMMPLRDAEIERFISRCVVCEAPANVIAVHSQSLSIPTCPNGW
RSEWVGYSLLQYNAAGAQGSGQMLQSSGSCLPNMRNNPYIECHGRGTCWYYATQVTFWLS
TINEQNQFETPVSETLKGQDKVNRASRCSVCIKQTSTTSSNEP
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgttcaccagatccttaatctggatagcaatagttttaacaacaaattcatac
cttgcttcaagtcaaaaatgtggaggaacttgcacacaatgcagtaacatatgtgttggt
aaaaaaggagataggggcagtggaggcttgccgggatacagaggacctccaggattaccg
ggatttccgggtcctgaaggtcccattggtgcacctggtgataaaggagactccggacaa
cctggaatggttggtgatgcaggatcaagaggaaaagttggaccacctggtctacctgga
aatcctggaagacatggtcatcctggtaacgatggtagacagggagaacctggattgcct
ggatgtaatggcactaaaggagatagaggaccgagtggaccacgaggacgggatggcaca
agaggagatcgaggtttgactggagacgttggtcctgctggtgaacctggtgattcaaca
gccacccgtttaaaaggacaaaaaggtgaacctggaagggatggagatcagggttttact
ggagaccaaggaaatactggcgaaaaggggaacacaggggcaaaaggaaacagaggtagg
acaggtggtagaggactcaaaggcgaaccaggctttctgagaaaccttacttaccttggt
gttaaaggagatcgtggaccaaaaggtatacctggtccacccggtatagcatgccaaaca
caagttactgggaatttgacaacggttgatgcaccaaagggagctaatggaaccaaaggt
caaaaaggagagcctggatcacaaggtcccgctggaaagtctggagaacagggagatgac
ggcgaacagggtgctactggtgacagaggagaaaggggtgcaattggacctaagggatcc
aaaggcatgatcggaaacacaggcagaagtggagaacaaggacagaggggagaaattggt
ccagttggaagtcgtggtgaaaaaggtgatacaggtccgaaaggtgaccgtggaattaca
gggaatgctggaagagacggagaaccaggaaggccagcaacaggtacacctggagcacaa
ggcgatgaaggtccgcgcggtcctgctggaagtgatggaatacagggacctgtaggacca
gctggtcctcccggaaaaatgggagaaacaggacctcttggtcctaaaggtaatgacggt
gaaccaggccctgctggtccaacaggcgaaaatggaaacccgggtgagccaggaatgaaa
ggtcctactggtccgcaaggaccacaaggagaaaaaggaaacacaggcatacctggaaac
cctggtctaagcatgagtggaacaccgggaatggatggtgatactgggccacgtggaccc
ccaggagaacaaggaccaactggttttccaggacctgccggtaagccaggacaagttact
acagaaaaaggtgaaaaaatatttccaggtgcccccggagaaagaggcccaccaggacta
aaaggggttgaaggtgaacaaggtaaaactggtaggcggggagaaaaaggagcaccatgc
acatcgtgccctcctggaccacagggagaaagaggtttgcctggtcaagcaggtattgat
ggtgcaccaggcgaaagaggtttaaaaggcgaaaaaggaggaattggtgctgaaggaagt
gttggtaaccctggtccgcgcggtgaaactggaccgcagggaaacccaggtgaacaagga
cgtcaaggagcgaatggtgcgaaaggtgctgcagggaaagatatagttattaacggggaa
agaggagatcggggtgagcctggccaaccgggaagtactggtcctgttggctttcccgga
gctataggtccgcgtggtgatccaggcagccctggaccaccaggagagaatggaattcaa
ggagaaactggtggtaatggagcgcctggtcgaaatggtattgatggagaaaatggtgca
aacggagaaaaaggtgaacctggagtaggcgaaagaggattcagaggagaacgtggagct
actggaccaagagggctaacaggtccaagaggaccaatcggacaaccggggaagaaaggt
gaaccatttccaaccatcttaaagggcccaccaggtttgccaggtcagaaaggaaatact
gggcaagcaggtcctgcaggagcagttggtcccgcaggtccaccaggtgttcaaggagaa
gacggtcaaagaggagaacctggaaatggagaaaaaggaaataaaggaaaccaaggtcta
cgtggacaaccaggacaagtaggagaaagaggaagagacggagctaatggcatacgtgga
gaaaagggagtacctggacaagatggtccagcaggtccagctggtcctatcaagggtgag
aagggtgattcaggagatcctggtgagcgagggaaagacggtcctcctggaacttctgca
gcgcggggattacctggagcccctggcctaaatggcacgaagggggaaaagggtgactcc
ggatcgcgtggaagttcaggcgatccaggaactagaggtccaccgggtaacagaggtgag
agaggagaaaaaggagatcgtggagaatctcgtgctggagaaaaaggagatcctggcaag
gaaggaaaacgaggagaaaagggacgtgatggacgtgatggtcagaatggagttggtatt
cctggaccaagaggtgatcaaggtgagagcggtaaccctggagttggagttagaggacca
ccaggagagcgaggtgaagatgggctacgtggtgaaccgggtaaatcaggctacaaaggt
gatatcggacccccagggaaggatgggaaagatggaacaccaggaaaagatggcgcaata
ggggagccaggagaaactggaaaaaaaggagacacaggacccgtcgggccggaaggaaga
gaaggagaaagaggagaacctggatatgttggagaaaaaggagctaagggtaattctggt
ccacggggacctcccggggcaacaagtagtgttcagggaccaaaaggcagcagaggaaga
cctggtcaaataggtgaaccaggaagacagggagaaccaggtggccctgggccacaaggg
gaaaaaggagatccaggtattggtactgaaaagggaaacaaaggtgacatcggtccccct
ggacccgcaggggaaaaaggcgacaggggtgaacggggttctgaagggcgtcaaggggaa
acaggtagggaaggagccagaggtgagccaggacgagaaggaccaccaggtgctatagga
gatccaggtttacaaggaagagatggaccagctggtccgtcaggcccaccaggagaaaaa
ggaagcacaggttttattggcaagcctggagacaaaggggaaccaggcccaaaaggacca
aaaggagatcgtggattatatgaaagaggagaaactggtccaatcggaccccctggacca
actggaccccaaggaccgcctggaaaggattatgttttatctgttgataaaatagaaaca
gatattgaaaagggtagcaaaggacagaggggaaaacaaggcgaaaggggagagcgaggt
gaaaaaggagaaataggtgaaccaggtgttataggcaatgttggcgaagacggtccagca
ggtgatgtcggagataaaggagataaaggagaaaaaggaagagatggtacccaggggaca
cctggtgttaaaggaaatagtggtgctcctggtcgtgatggtccaataggtgaaaaggga
gacgtaggtacaccaggccaggatggtgccactggccctcaaggacaacaaggtccagag
ggaccaactggtaaatctggagaaccaggaagtaggggagataaaggtgtggctgggcca
cctggtccagattgtcctgaagtaagaggaccttctggagaacgtggagagaaaggaaat
acggggaacagaggcaaaaaaggagaaccaggaccaccaggagaatcaaacgaaataggt
gctaaaggtgaccctggtgagccaggagaaaagggcgttgaaggagctgcaggtccccag
ggtgaagatggaccctctggtagagaaggagccactggaccaccaggaccagagggtttt
aaaggacagaagggtgaacccgggaaattaggtccaatcggacctaaaggaaaggatgcc
gtaggaacaggtgagaaaggcgacaaaggagaaaagggtgcaaccggtcccgttggcgcc
gatggtccaagaggagaagatggtagccgagggcctcaagggccaccaggaccacaaggt
gataaaggcgacaaaggggaagatggtctgagtggtcaaaatggtcaagatggacccgca
ggcccaccaggcccacaaggtgtgcaaggaaaagaaggagtaaagggagattttggacca
ccaggaccggcaggaaagagcggatcagctgattttggtcactatcttgtcaaacacagt
caatcaaccactgtacccgagtgtccgacaggtatggctaaaatgtgggaagggtacagt
ttcctgtactcacaaggaaatggaagaagtcatggacaagatcttggtcaacctggatca
tgcttatctcgtttcagtactatgccatttatgatttgtgacttggaaaacaaatgtaca
gtagcctctcgtaatgattactcgtactggttgagcgcacgagacgaaatgactatgatg
ccattgagagatgctgaaattgagaggtttatttcaaggtgcgttgtgtgcgaagcacct
gctaatgtcatagctgtacacagtcaaagtttgtctattccaacttgtccaaatggatgg
agaagtgaatgggttgggtacagtttattgcagtataacgcagctggtgcacaagggtct
ggacagatgctacaatcctcgggttcctgcttacctaatatgcggaacaatccttacata
gaatgtcatggtcgtggcacatgttggtactatgcaacgcaagtcaccttttggctgtcc
actataaacgagcaaaatcaatttgaaacacctgtttccgaaacactgaaaggtcaagat
aaggtcaatcgagctagcagatgttctgtttgcattaaacagaccagcacaacatcctcg
aacgaaccttag
DBGET
integrated database retrieval system
