Hydractinia symbiolongicarpus: 130640903
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Entry
130640903 CDS
T09218
Name
(RefSeq) exosome component 10-like isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130640903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130640903
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
130640903
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
130640903
NCBI-ProteinID:
XP_057303483
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All DBs
Position
4:5360237..5373934
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AA seq
797 aa
AA seq
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MDATKTNSTTAEEGNFPALGHSSLQDFSKTVLQKVVYATQRANALAGLSEDFDYWNSFPD
FREYSTEQGARVVNNIGELFRHHAVQCAWSSGTTSVKDVEERFERLVDANDIMLENVGSL
LDEASGLKKNDKPILPPSMKQSTPIVSSWNKRQGESGGNRQSTYKLLMAKNIERPQLKWL
DKIDNSNTPFMPYLKSKPNAVKELEYDAMETDDVVADFIHQQRIGGEKYDNINHPYVYEI
SHFELNDWQLEETPPQVYSQIQEMSLSYVDSQVLLDDMMNKLKQAKEIAIDLEHHSYRSF
QGFVCLMQLSTRTEDFIVDTLKLRDELHVLNEVFTDPAIVKVLHGADMDIGWLQRDFGVY
IVNMFDTGQAARTLHEERFSLAHLLHKYCDVTAQKQFQLADWRIRPLPDEMIRYAREDTH
YLLYIYDVLRNKLISHGNEMKNLLRSVYSKSSAICSTIYHKPMFFPDSHFAVYQKYRGRL
NPKQLECLRLVYGWRDKTAREEDESYGYTLPNHMMFQIAENLPKEPPGVIACCNPVPPLV
KQRVMDIHQLVLQAREFDPVKTRPVMTETTEHREQTDATDVLQTKFDSSVFHTKTGFEIY
NITGPPVTIKKPSLTAFEEMVKEHLEITEGKRKAKEIISVLRSPFEMYLPNTGKEAVNPN
VINQTWQTASKEKLVEQNEELILVKEIPKKEKRKSNEMITSEEQTLREMLPKKKKHKQNS
DITSTQKPVEKVTYDKTVKRSSDYVPFNYSKSDLKKFTSGKTLTPMEVIEVTEEPKFGKV
VRTKVHSKSGARSMTYK
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgacgaaaacaaattctaccactgcagaagaaggaaactttcctgcgttggga
cattcttctttgcaagatttttcaaagactgttttacaaaaggtagtgtatgctacacaa
cgtgctaatgctttggcaggtctatcagaggattttgattactggaatagtttcccagac
tttcgagaatattccacggagcaaggagcacgtgtagtgaacaatattggtgaattgttc
cgccatcatgcagttcaatgtgcttggtcatcaggaacaacttcagttaaagatgttgag
gagcgttttgaaagacttgttgatgcaaatgatataatgttagaaaatgtgggatccctt
cttgatgaggcttctggtctaaagaaaaatgacaaacccatattacctccttccatgaaa
cagagcactcctattgtgtcaagttggaataaaagacagggcgaatctggtggaaataga
caatctacctacaaacttctaatggcaaaaaatatagagagaccacagttaaaatggtta
gataagattgataactccaatacacccttcatgccatacttgaaaagtaaaccaaatgca
gtaaaagaactggaatatgatgcaatggaaacagatgatgtagttgctgactttatacac
cagcaaaggatagggggggagaaatatgataatataaatcatccatatgtatacgagatt
tcacacttcgaactgaatgattggcagttagaagaaacgcctccacaggtatattcgcaa
atacaagaaatgtctctctcctatgttgattcacaagtgctgttagatgatatgatgaat
aaactgaagcaggccaaagaaattgccattgatttagagcatcactcctaccgttcattc
caaggttttgtatgtttgatgcaactttcaacgcgtacagaagacttcattgtggataca
ttaaagcttcgagacgagttacatgtacttaatgaggtcttcactgatccggccattgtt
aaagtacttcatggtgcagacatggatattggttggttgcaacgtgattttggtgtttac
attgtaaatatgtttgatactggacaagcagctcgaacattacatgaagaacgattttca
ctggctcacctactgcataagtactgtgatgtaactgcacaaaagcaattccagttggct
gattggaggataagaccgctgccagatgagatgatcagatatgcacgtgaggatacccac
tatctgctttatatttatgatgtgttacgaaataagctgatctcacatggcaacgaaatg
aagaacctgctgagaagcgtttattcgaaaagttctgctatttgttctacgatttatcac
aagcccatgttctttcctgattctcattttgccgtgtaccagaaatatagaggaagattg
aacccgaaacagcttgagtgcttaagacttgtttatggctggcgtgacaaaactgctcgc
gaagaagatgagagttatggttacactttgccgaatcacatgatgtttcaaattgcagaa
aatttaccaaaggaaccacctggagtaatagcatgctgcaatcctgtccctccattagtg
aagcaaagagtaatggatatacaccaactggttttacaggctagagaatttgatccagtt
aagacacggccagttatgaccgaaacaacggaacatagggagcagactgacgctacagac
gttcttcaaacaaaatttgattcttctgtgtttcacaccaaaaccggttttgaaatatac
aatatcactggacctcctgtcaccataaagaagccatcgttaactgcatttgaagaaatg
gtaaaggagcatttagaaatcaccgaagggaaaagaaaagcaaaagaaataatatcagtg
cttagaagtccgtttgaaatgtatttacccaacacaggcaaggaagctgtcaatcccaac
gttattaatcaaacatggcagacggctagcaaggaaaaattagttgagcagaacgaggaa
ttaattcttgtaaaagaaattccaaaaaaagaaaaaaggaagtcgaatgagatgattaca
tccgaagaacaaactttgagagaaatgctgccaaagaagaaaaaacataaacagaattca
gatattacatcgacgcaaaaaccggttgagaaagtaacatacgacaaaacagtaaagagg
tcatcagactatgtgccttttaattattcgaaaagcgatttaaagaaatttacgtctggc
aaaaccttaacgccgatggaagtaatcgaagtaacggaagaaccaaaatttgggaaagtt
gttcgtacgaaagttcactcgaaatctggtgcacgttccatgacgtacaaataa
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