Hydractinia symbiolongicarpus: 130641952
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Entry
130641952 CDS
T09218
Name
(RefSeq) DNA excision repair protein ERCC-8-like isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03420
Nucleotide excision repair
hsy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130641952
09124 Replication and repair
03420 Nucleotide excision repair
130641952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsy04121
]
130641952
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130641952
Ubiquitin system [BR:
hsy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130641952
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
130641952
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_SCAP
KNTC1_N
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_IFT122_1st
eIF2A
Beta-prop_IFT140_1st
Mala_s_1-like
Rav1p_C
Motif
Other DBs
NCBI-GeneID:
130641952
NCBI-ProteinID:
XP_057304967
LinkDB
All DBs
Position
4:24019870..24035956
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AA seq
374 aa
AA seq
DB search
MLHALRSRETGLNWKFNLYVKSTLGRNLVLSNNSFQFNADVSSVNCIDCENAENRYVLAG
YGNGSISIFDTCIPSNTHVFPAVGSINRLYELCHRYSVEGVQWYPHDTGLFFSLSADRTL
KIWDTNELQMAEQFQFSDTIHSFHVSEKAKKHSLVAVACEDSKIYLCDVKTGSKTHFLKG
HKGAVLTTRWSPRNENILVSGSSDKHIYIWDVRKVKSVLMSLELNDGSGAHRGQVNGMKF
TSDGVSLLSFGTDHQLRLWDVNSGNVTKVNYGRIENNRSKNIHFDVSKGVVNDLVFIPTM
YHLDVFQIYTGKYIQSLSGHFMPVNSCCYNKSYQVTQSGCVKNNFVVVCYSLHDVIFLST
CVAFFVGRGTNAMN
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgttacatgcattgcgtagccgagaaacaggtttgaactggaaattcaacttgtatgtg
aagtctacattaggaaggaatcttgtactcagcaataattcatttcaatttaatgcagac
gtaagcagtgtaaactgtattgattgtgaaaacgcagagaatcgatatgtgttagcaggc
tatggaaatggaagtatttcaatatttgacacatgcattccatcaaatacacatgttttt
cctgcagtgggttccatcaacagattgtacgaactttgccatcgatatagtgttgaagga
gttcagtggtatccccatgacactggtttgttctttagcctatcagctgacaggactttg
aaaatatgggatacaaatgaactacagatggctgaacagtttcagttttctgatactatt
cattccttccatgtatctgaaaaagccaaaaagcattcccttgttgcagtggcatgcgag
gacagcaaaatatatctctgtgatgtaaagactgggtcaaaaacacattttttaaaaggt
cacaagggggcagttttaactacaagatggtccccaagaaatgaaaacattttagtttca
ggaagttcagataaacacatatacatttgggatgttcggaaagtaaaatcggtcttaatg
tcattggaattaaacgatggatcgggagcacacagaggtcaagtgaacggaatgaaattc
accagtgatggagtatctctactctccttcgggacggatcatcaattaagattatgggat
gtaaacagtggaaatgtaacaaaggtgaactatggcagaattgaaaacaaccgttccaaa
aatattcatttcgatgtttcgaaaggcgttgtaaacgacttagtatttattccaacaatg
taccacttagacgtgttccaaatttacactgggaaatatatccaaagtttgtccggacat
ttcatgccagtcaactcttgttgttataataaaagttaccaggtaacgcaaagcggttgt
gttaaaaataacttcgtggtggtgtgttattcgttgcatgatgtcatctttttgagcact
tgtgtggctttttttgtaggtcgcggtaccaatgcaatgaattag
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