KEGG   Hydractinia symbiolongicarpus: 130642018
Entry
130642018         CDS       T09218                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
hsy  Hydractinia symbiolongicarpus
Pathway
hsy03020  RNA polymerase
hsy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    130642018
  09124 Replication and repair
   03420 Nucleotide excision repair
    130642018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsy03021]
    130642018
   03400 DNA repair and recombination proteins [BR:hsy03400]
    130642018
Transcription machinery [BR:hsy03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     130642018
DNA repair and recombination proteins [BR:hsy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      130642018
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4
Other DBs
NCBI-GeneID: 130642018
NCBI-ProteinID: XP_057305068
LinkDB
Position
4:25388550..25392470
AA seq 142 aa
MSAGEKDQAQHVEEEDATELQFPKEFEAAETLLNSEVFMLLEHRKAQNENADDDQEMSDV
FMKTLNYTQRFSRFKNRETIAQVRGLLSKKKLHKFELACIANLCPETAEEAKTLIPSLEG
RFDDEELQQILDEIKTHRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atgtctgctggtgaaaaagaccaagcacaacatgttgaggaagaggatgccacagaactt
cagtttccgaaagaattcgaagctgctgaaacgttattaaattctgaagtattcatgttg
ctggaacacagaaaagctcaaaacgaaaatgcagatgatgatcaggaaatgagcgatgtg
ttcatgaagacactaaattacacacaaaggtttagtcgattcaaaaacagagaaacgatt
gcacaagtgagaggactgctgtcaaaaaagaagttgcataaattcgaacttgcttgcatt
gcaaacctatgtcccgaaacagcagaagaagccaagactctaataccaagtcttgaagga
agatttgacgatgaggagctgcaacaaatactagatgaaatcaaaacacatcgaagtttt
caatattga

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