Hydractinia symbiolongicarpus: 130645014
Help
Entry
130645014 CDS
T09218
Name
(RefSeq) cleavage stimulation factor subunit 2-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130645014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130645014
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130645014
U7-dependent histone pre-mRNA processing factors
130645014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_occluded
RRM_Rrp7
RRM_5
Motif
Other DBs
NCBI-GeneID:
130645014
NCBI-ProteinID:
XP_057306837
LinkDB
All DBs
Position
5:17031362..17069304
Genome browser
AA seq
508 aa
AA seq
DB search
MSNMATQIREISAVKDQQLKEAAEKSARSVFVGNIPYEATDEQLKDIFSQAGPVLSFRLV
YDRETGKPKGYGFCEYKDTETAQSAMRNLNGTEIHGRQLRVDSAASQKGPEDPRAFIKEI
SPYGQAVNPNKAPETITNAVASLPPEQMFELMKQMKLCIQNNPEEARQMLLQNPQLAYAL
LQAQVVMKIVDPKVADAILHQQRGEPLPINKLMDTAGIGQGGLGGHSAPLQHGPPPHKPD
VWRGDVPPPHDIGHPRGDMFRGDMRSHPPPINEFGRPPMDRDMRGPPPDFRGPSSMDERF
LDGPCQPPQFDPRDRPSLDRMPGDPRDGCGPPPPQMMDHRDPRMRVDERGPPRDERGPPP
RDDRMLPRGPPPPRDPRGTMPPDSRAGQMPPDNRDSRSRPPPVHGGDPSFMSPTNHVGPV
PPGHNGPLPTLNGPPPPGQFDQRRDAPQFPSGLGNLSGSGGSGGPNEEEKQRLIMQVLNL
TESQINMLPEDQRESIRLLKSQFANTRQ
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatatggcgacgcagatacgagaaatttcagccgtgaaggatcagcaattaaag
gaagcagcagaaaagtcggcaagatctgtttttgttggaaatattccatacgaagctact
gatgaacaattgaaggacatatttagtcaagctggacctgttttgagtttcaggctcgtg
tatgatcgtgaaacaggtaaaccgaaaggttatggcttttgtgaatacaaggatactgaa
acagcccaaagtgctatgcgaaacttgaatggtacagaaatccatggtcgacagttacga
gtggatagtgctgcaagccaaaagggtcctgaagatccacgagcattcatcaaagaaatc
tccccctatggacaagcagttaatccaaataaagctccagagacaataacaaatgcagtt
gcaagtttgccacctgaacaaatgtttgaactgatgaaacaaatgaagctttgcatccaa
aacaaccctgaggaagcacgtcaaatgttactgcaaaatccgcagcttgcctacgcatta
cttcaagcacaagttgtcatgaagattgttgatccaaaagttgccgatgcaatcctacac
cagcaaagaggagaaccactaccaattaacaaattaatggatacggctggtattggacaa
ggaggtctagggggacattcggctcccttgcaacacggacctcccccacataaaccagat
gtgtggagaggagatgtgccaccaccacacgacataggacatcccaggggtgatatgttt
aggggagatatgcgtagtcaccctccacctataaacgagtttggtcgtccgcctatggat
cgagacatgaggggacctccgccagatttccgtggaccatcttcgatggacgaaagattt
cttgatggtccttgtcaaccgcctcagtttgatcctcgcgaccgtccttcattggataga
atgccaggggatccaagggatgggtgtggccctccgccaccccaaatgatggaccatcgg
gatccacgcatgagggttgatgagagagggccaccaagagacgaaagaggaccaccaccc
agagatgatcgaatgttacccagaggtccacctccacctcgagatccgcgtggtacaatg
ccccctgatagtagggcaggtcaaatgcctcccgataatagagattcacggagcaggcct
cctccagttcatggcggggatcctagttttatgtcccctaccaatcacgtaggacctgtt
ccacctggccataacgggccactaccaacactaaatggcccgcctccgcctggacagttt
gatcaacgccgtgatgctccacaattcccttcagggttaggaaatttgtctggttctgga
ggttcaggtggacctaatgaagaggaaaaacaacgtttaatcatgcaagttttaaacctg
acggaaagtcaaatcaacatgctgcctgaagatcaaagagaaagcatcagattgctcaaa
tcccaatttgctaacactcgccaatag
DBGET
integrated database retrieval system
