Hydractinia symbiolongicarpus: 130645554
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Entry
130645554 CDS
T09218
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130645554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsy03041
]
130645554
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130645554
Spliceosome [BR:
hsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130645554
Complex C
U5 SnRNP specific factors
130645554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
SWI2_SNF2
DrmE_N
Motif
Other DBs
NCBI-GeneID:
130645554
NCBI-ProteinID:
XP_057307563
LinkDB
All DBs
Position
5:24438764..24455697
Genome browser
AA seq
2139 aa
AA seq
DB search
MADATARSMQYEYKANSNLVLQADLSLIERRGRDEATGEVLSLQGHLGGIKMGDKYIRAR
PPALEQEKEKKAKRPKTSEKEGDINYGKMKSSSLLSEQVDEMAGIFYRPKTTETRQTYEV
LLSLIQAAIGDQPRDILCGAADEVLICLKDEKLKDRERKKEIAALLGSVPDERYALLVNL
GRKITDYSVDKDAAGDEDMIDENYGVAVQFDEDDEEDKDVREIKDESDEDEAEGVEADVD
MTLHGGLDDEEGGFKKSNEILHPRQVDAYWLQRELNKFYKDAEVSRAKSEEVLDVLKTAS
DERDLENKLVLLLGHDKFAIIKTIRKHKKMILYCTLLAMAETMKERKNLETVMKADPELA
EILAQLSEQDQEDLVQAERARKAAARKSRVDADLNALEGEDKMSRYARKLLDLEDLSFKD
GSHLMANKKCQLPDGSFRKLRKGYEEVHVPAFKPKQVEQGERIPIADLPKYSQAAFEGYK
ELNLVQSKICSAALKSDENLLLCAPTSAGKTNVALMTILREVSKHINLDGTISTGEFKVI
YIAPMRSLVQEMVMNFSKRLQSYGIQVSELTGDHQLSKEQIDSTQVIVCTPEKWDIITRK
AGERTYTQLVRLIIIDEIHLLHDDRGPVLESIIARTIRQVESTQEPVRLVGLSATLPNYE
DVATFMRVNIDKGLFFFDNSYRPVPLEQQYVGVTEKKAIKRFQVMNEVVYEKTMDRAGKF
QVLVFVHSRKETGKTARALRDMCLERDTLGQFLREDSASMEVLRSESEQVKNLELKDLLP
YGFAIHHAGMARVDRALVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQIYSPEKG
KWVELGALDILQMFGRAGRPQYDTKGEGILITNHNELQYYLSLLNQQLPIESQFINKLAD
NLNAEIVLGTIQNVKDASTWLGYTYLYIRMLRNPTLYGISHDEFENDKLLEQRRMDLIHS
AAALLDKNQLIKYDKKTGLLQGTELGRIASHYYCTQESMATYNKLLKPTLSEIELFRVFS
LSSEFKYINVREEEKLELQQLIERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALVA
DMVYVTQSAGRLMRAIFEICLHRGWAQLTDRSLNLCKMIDKRMWLSMTPLRQFKKMPLEV
VKKLEKKDFPWERLYYLGHNEIGELIHAPKMGKVIHKFIHQFPKVELATHIQPITRATLS
VELTITPDFQWEDKIHGNSEAFWIFVEDVDGEVILHQEYFLLKAKYAADEHIIKFFVPVF
EPLPPQYFIRVVSDRWLHAETQLPVSFRHLFLPEKNTPPTELLDLQPLPVSALRNPDFEA
LYQDKFPYFNPIQTQVFNALYNSDDNIFIGAPTGSGKTICGEFAILHLLLQHHDARCVYI
TSLQSLAEQVFTDWRSKFGIMLGKNVVMLTGETSADLKLLAKGNIIISTPDKWDVLSRRW
KQRKNVQNVNLFILDEAHLIGGENGPVMEVICSRMRYISSQIEKSIRIVALSSSLANSKD
VAQWLGVSTNNVFNFHPNVRPVPMELHIQGFNITHTGSRLIAMVKPAYQAISRLSPRKPV
IVFVPSRKQSKITALDLLSFCGAENQSQRFLHCTEEDLQPHLKRIQEKTLKETLAYGVGY
LHEGLSDIEVKVVEQLFSSGAVQVMVVSRTLCWAVSTHSNLVVVMDTLYYEGKMHSYVDY
PVTDVLQMLGRANRPLIDDSGKAVILCLASKKDFYKKFLYEPLPIESHLDHCLHDHFNAE
VVTKTISNKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHMSELVENTLSDLEQS
KCVSIEDEMTCTPLNLGMIAAYYYINYTTIELFSVSLSAKTKLKGLIEIIASAYEYESIP
IRQHEDSVLKQLSNRVPYKVSNTKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEFILGKA
MRLIQACVDVLSSNGWLSPAITAMELAQMVTQGMWSKDSYLKQIPHFSADIIKKCQEKEI
ESVFDIMDMEDEERNNLLRLSELQMQDVAKFCNRYPNIELAYEVADKDSLSSGGPIVVNV
NLEREEEQPGPVVAPFFPQKREEGWWLVIGDPKNNSLISIKRLTLQQKAKVKLDFIAPSA
GAHTYNLYYMSDCYMGCDQEYPLKISVQEGDDMSESDSN
NT seq
6420 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgcaactgccaggtctatgcaatatgagtacaaagctaactcaaatcttgtg
ttgcaagctgatcttagtttgattgaaagacgtggtcgtgatgaagctactggagaagta
ctctcactacaaggtcatttgggtggcattaaaatgggggacaaatacatccgtgccaga
ccaccagcattggaacaagaaaaagaaaagaaagccaaacgtccaaaaacatcagaaaag
gaaggagatataaactatggaaaaatgaaaagcagttcacttctttctgagcaagtagat
gaaatggctggtatattctacagacctaaaacaacagaaactagacaaacttatgaagtt
ttgctcagtcttattcaggcagctattggtgatcagccacgtgatattttgtgtggagca
gcagatgaagttttgatttgtttaaaagatgaaaaattaaaggatagggaaagaaaaaaa
gaaattgctgccttgctcggtagtgttcctgacgaaagatatgcgctcctagtaaatctt
ggacgtaaaatcactgattactcagttgacaaagacgctgctggtgatgaagatatgatt
gatgaaaattatggcgtagctgttcaatttgatgaagatgacgaagaggacaaagatgtg
agagaaataaaagacgaatcagatgaagacgaagcagagggagtggaggctgatgttgat
atgacattgcatggagggctggatgatgaggaaggtggtttcaagaaatcaaatgaaata
ttacatcccagacaagttgatgcatattggctgcagcgtgagctcaacaagttttacaaa
gatgcagaagtttcaagagctaaatctgaagaagttttagatgttctcaagacagcgtca
gatgagagagatctagaaaacaagttggttcttttacttggtcatgataagtttgcaatc
atcaaaacaattcgaaaacataaaaagatgattctgtattgtacacttctggccatggca
gaaacaatgaaagaacgaaaaaatctggaaactgtgatgaaagctgaccctgaacttgct
gaaatccttgcccaactttctgagcaagatcaagaagatttggttcaagctgaacgtgca
cgtaaagctgcagcaagaaagtcccgtgtggatgctgatttaaatgcactggaaggtgaa
gacaaaatgagtcgatatgcaagaaaactgttggatttagaagatctttcatttaaagat
ggtagccatctcatggcaaacaaaaagtgccaattgcctgatggttcttttcgaaaattg
agaaaaggctatgaagaagttcatgtaccagcatttaaacctaaacaagtagagcaaggg
gagcgaattccaatagctgatttaccaaaatattctcaagctgcttttgaaggttacaaa
gaactcaatcttgttcaaagtaaaatttgttctgcagcattaaaatcagatgaaaacctt
ttactttgtgcaccaactagtgctggtaaaacaaatgtggcgttgatgacaattttacgt
gaagttagtaagcatatcaatctcgatggtactatcagtactggtgaatttaaggtgata
tatattgcaccaatgagatccttggtacaggaaatggtgatgaatttctcaaagagattg
caatcctatggaatccaagtatctgaattgactggagatcatcaactaagtaaggagcaa
attgacagcactcaagttattgtttgcactccagagaaatgggatattataacaagaaaa
gctggtgaaagaacatacacacaactggttcgactcattattatcgatgaaattcattta
cttcacgatgatcgtggaccagtgctagagtcaatcattgctagaaccatccgacaggtg
gagagtacacaggagccggtcagattagttgggctaagtgccacacttccaaactatgaa
gatgttgcaaccttcatgagagttaacattgacaaaggattgttctttttcgataacagc
tatagaccagttccgctagaacaacaatatgtcggtgtcacagaaaaaaaagctattaaa
agatttcaggttatgaatgaagttgtctatgagaaaactatggatcgggctggaaaattt
caagttcttgtttttgtacattcaagaaaggaaacaggcaaaacagctcgtgcattacga
gacatgtgcttagaacgtgacactcttggtcagtttttgcgtgaagattctgcaagtatg
gaggttttgcgatctgaatcagaacaggtaaaaaatcttgaacttaaagatttgttgcca
tatggatttgccattcatcatgcaggcatggctcgtgttgacagagcattagtggaagat
ctttttgctgataaacatattcaagtacttgtatccacagcaactttagcttggggtgtc
aacttgccagctcatacagtaattataaaaggaacacagatttacagcccagaaaagggc
aaatgggtagaattgggagcgttggatatacttcaaatgtttggtcgagctggaagacct
cagtacgatacaaaaggagaaggaatcttaattacaaatcacaacgagttgcagtactat
ttatctttattaaatcaacaacttcctatcgaaagtcagttcatcaataaattggctgat
aatttaaatgctgaaattgtattgggcacaattcagaatgtaaaggatgcttctacctgg
cttggctacacatacttgtatattcgtatgttacgtaacccaaccttatatggaatatcg
catgatgagtttgaaaatgacaaacttttggaacaacgcagaatggacttgatacacagc
gctgcagctctacttgacaaaaatcagttgattaaatacgacaaaaagacagggttgtta
cagggcactgaacttggtaggattgctagtcactattactgtactcaagaatccatggct
acttataacaagttactcaaaccaacactgagtgagattgagctgtttcgggtgttctcc
ctatcgtctgagttcaagtacattaacgtgcgtgaagaagagaagcttgaattgcaacag
ctaattgagagagtgccgatccctgtgaaggagagcatagaagaaccaagtgcaaaaatc
aacgtgttgttgcaagcttacatttcacagctgaagctggaaggtttcgctttggtagca
gacatggtgtacgtcactcaatcagccggacgtttaatgagagcgatatttgaaatatgc
ttgcacagaggttgggctcaacttactgaccgctcgttaaatttatgcaaaatgatcgac
aagagaatgtggttgtccatgactccgcttcgccaatttaagaagatgcctttagaggtc
gttaaaaagcttgagaagaaggactttccatgggagagattgtattatcttggccataat
gaaattggggaattgattcatgctccgaaaatgggcaaagtaattcataaattcattcat
caatttccgaaagttgagcttgcaacgcacattcaaccgattacccgagccaccctgagt
gttgagttaactatcactcctgacttccagtgggaggacaaaattcatggtaattccgag
gccttctggatatttgttgaagacgttgacggggaagtgattctgcatcaagaatatttt
ctgttaaaagcaaaatacgccgctgatgagcatatcattaaattctttgtgccagtattt
gagccattgcccccacagtattttatcagagttgtttcagatcgatggttgcatgctgag
acccaattacctgtttccttccgtcatttatttttaccggaaaagaacactcctcctact
gagctgttggatttgcaacccttgccagtttctgcgttgagaaatcctgattttgaagcg
ctctaccaagacaaatttccatactttaatcctatccaaacccaagttttcaatgcactt
tacaattctgatgataatattttcattggtgcaccaactggaagcgggaaaacgatttgt
ggtgaatttgcaattttgcatctgctactgcaacaccatgatgctcgatgtgtttacatt
acgtctctgcaatctcttgcagaacaggtttttacagattggagaagtaaattcggtatc
atgttgggcaagaacgtggtgatgttgacaggagaaacaagtgctgatttaaaactgctt
gctaaaggtaacatcattattagtacacccgataaatgggacgtgctctcgagaagatgg
aagcaaagaaaaaacgtgcaaaatgtcaatctgtttattctggacgaagctcacctgatt
ggtggagagaatggacctgttatggaagtaatttgttcacggatgcgatacatatcttca
caaatcgaaaaaagtattcgtatcgttgcattgagttcttcgttagccaactcgaaagat
gttgcgcagtggcttggtgttagcacgaacaacgtgttcaacttccatcccaacgttcga
cctgtaccaatggaattacacattcagggttttaatatcactcacactggatcgcgttta
attgctatggtaaaaccagcttaccaagcgatttcaagactgtcaccaagaaagcctgtt
attgtatttgtaccttctcgaaagcaaagcaaaataactgcccttgatttgctttcgttt
tgcggtgctgaaaaccaatcgcaaagatttttgcattgtacggaggaagatttacaaccg
catttgaagcgaatacaagaaaagacgctgaaggagacgttagcatacggtgtcggctat
ctacatgaaggtttgagtgacattgaggtgaaagttgtcgagcagcttttttcttcagga
gcagtgcaggtcatggttgtttcccgtaccctttgttgggcagttagcactcattctaat
ctcgtcgttgttatggatacactctactacgaagggaagatgcactcctacgtcgactac
cctgtgacagatgtgttacaaatgcttggtcgcgcaaacagaccactgattgatgactct
ggcaaagcggttattctttgtttagcttctaagaaggacttctataagaagtttttgtac
gagcctttaccaatcgaatcacatcttgatcattgtttgcacgaccactttaacgcagag
gttgtaacgaaaaccatttccaataaacaagatgctgtggactatttaacgtggacgttc
ttatatcgtcgtatgactcagaatccgaactactataatctacaaggtgtatcccatcgc
catttatcagatcacatgtctgaattggtggaaaatacgctctcagatcttgaacaatct
aagtgcgtgtcaatcgaagatgaaatgacttgtacgcccctcaatctgggtatgattgca
gcgtattattacataaactacaccactattgagctctttagcgtatctctctcagcaaaa
acgaaattgaaggggctcatcgaaattatcgcatctgcgtatgagtatgagtctataccg
attcgacaacacgaggattctgttcttaaacagctatcaaatcgtgttccttacaaagta
tcgaacacaaaattcaatgatcctcacgtaaaaactaacctgctattgcaagcacatttg
tcaagaatgcagttgtcagcagaattgcaatctgatacggagtttattcttggaaaagcc
atgcgtttgattcaagcctgtgttgatgtgttaagtagcaacggttggttatccccggct
atcactgctatggagctggcacaaatggtaacacagggcatgtggtcaaaagattcgtat
ttgaagcaaattccgcacttctccgcagatattattaagaaatgtcaggagaaggagatt
gagtctgtgtttgatatcatggatatggaagatgaagaaagaaacaaccttctacgcttg
tctgaactacaaatgcaggatgttgctaaattctgcaatcgctatccaaatattgagttg
gcttacgaagttgctgacaaagattccttatcgtccggtggccctatcgttgtgaatgtt
aatttggaaagagaagaggagcagccaggacctgtggttgcacctttcttccctcagaag
agagaagaaggatggtggttggtgattggtgacccgaagaataacagtttaatatccatc
aaacgattgactttgcaacagaaagcgaaagtaaaattggattttatcgctccatctgcg
ggtgcgcacacgtacaacttgtattacatgagcgattgttacatgggttgcgatcaagaa
tatcctttaaagatctccgtgcaggagggtgatgatatgagcgaatcagatagcaactag
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integrated database retrieval system
