Hydractinia symbiolongicarpus: 130645640
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Entry
130645640 CDS
T09218
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130645640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130645640
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130645640
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
FeoA
Motif
Other DBs
NCBI-GeneID:
130645640
NCBI-ProteinID:
XP_057307673
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All DBs
Position
5:25447266..25482667
Genome browser
AA seq
930 aa
AA seq
DB search
MAALQSNQQISFADNIGEQGFLSYLSSLGEKPSTTLRIFDRGEYYTVHNEDAKFAAKEFF
KTYTVIKELGKGSTKVPSVVLSKMNFETFLRDLLLTWQYRVELYRNKASKSNQWELIGKG
SPGNLQQFEEILFNNIDMSASAIVMSLRLASDANGQRVVGAAFADAALQIFNVCEFSDND
QFSNVETLLMQVGPKECLIQRQDLSAEGSKLKIVLERSNVLVTEAKKADFSSKDVTQDLD
RLLKSNSCGSAARRELDLPHAVSCLSSIIKYLELLSDDSAFHQYTLKSFDLSQYMRLDAA
AVRALNILPSLTDGGNKTMCLSGLLNLCKTTPGQRLLGQWVKQPLMDAKKIEERLDIVDI
FFNNDDIRLSVQDGSLRRIPDLSRLSKKFQQKRANLQDCVRVYQAIRQLPHLLTTLKKYD
GEHKVIMEEVFCKPFQDAVNDFSKFMELVETTVDLDEVENHEYLIKAEFDESLQECKDNL
DYVVTQLESELSKAARDLGLEKGKTIKLESNSPLGHYFRVTLKEEKALRNNKKYTTVETR
KDGVRFVNSSLKSLGIEYKSHKDTYSELQTQLANEVIKIAAGYSDPLQTLSDQIAYLDVL
LSFATVASQAPTPYVRPVVHPKGKGKIVLKGSRHPCLEAQDDVSFIANDVSLIKDDQEFL
IITGPNMGGKSTYIRQVGLITLMAQIGSFVPCDQAEISIVDSILARVGAGDSQLKGVSTF
MSEMLETASILRAATKDSLIIIDELGRGTSTYDGFGLAWAISEHISTSIKSFCVFATHFH
ELTSLADEISTVRNFHVTALTSKEQLTLLYKVKPGVCDQSFGIHVAEIAHFPKHVVDFAK
EKAKELEDFQVLSNDKECDQYNEALSGEPDAKKRRSEKKEGDEIIRKFVEKLRSLHEAKL
NDDELVKSVTAIKEEVLACGNQYVIDILNK
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacttcaatcaaaccaacaaatttcctttgctgacaacatcggagagcaaggt
tttttatcctacttatccagtttaggtgagaaaccaagcacaacgttaagaatattcgac
cgaggggaatattacacggttcacaatgaggatgcaaaatttgctgccaaagaatttttc
aaaacttatactgtcatcaaagagcttgggaaaggaagtaccaaggttccatccgttgtg
ctaagtaaaatgaactttgaaacattccttcgggacttattgcttacttggcaatatcgc
gtggagctgtacagaaacaaagcaagcaaatctaaccaatgggaacttattggaaaagga
tcacctggaaacttgcaacaatttgaagaaattcttttcaacaatattgacatgtcagca
tctgctatagtaatgagtcttcgtcttgcaagtgatgcaaatggacaaagggttgttggt
gcagcttttgcagatgcagctttacagatctttaatgtgtgtgaattttcagacaacgat
caattttctaatgtggaaacactgcttatgcaggtgggtccgaaagaatgtctgattcaa
cgacaagatttaagtgcagaaggcagcaagttaaagattgtgttggagagatctaatgtt
ttggtcacggaagctaaaaaagctgatttcagttcaaaagatgttactcaggatttggat
agattattgaaatcaaattcatgcggcagtgcagcaagacgggagttagacctgcctcat
gcagtatcttgtctatcatcaatcataaagtatttggagcttctgtctgatgactcagca
tttcatcagtacacattaaagtcgtttgatttaagtcagtacatgcgccttgatgcagca
gctgttcgagcattaaacatactgccttcattgactgatggaggaaacaagactatgtgt
ctgtccggtttgttaaacttgtgtaaaacaactcctggtcaacgtctgcttgggcagtgg
gtaaaacaaccgttaatggatgcaaaaaaaattgaggaaagacttgatattgttgatata
tttttcaacaatgatgatatacgactttctgtgcaggatggttcactaaggcgaatacca
gatttgtctcgattgtccaaaaaatttcaacaaaagcgagccaacctacaggattgcgtg
cgtgtgtatcaagccatcagacaattgccccatctactgacaacactaaaaaagtatgat
ggtgaacataaggtgataatggaggaggtgttctgtaagccatttcaggacgctgtgaac
gatttctcaaaatttatggagttagttgaaactactgttgatttggatgaagtcgagaat
cacgagtatcttatcaaagctgagtttgatgagtcgcttcaagaatgtaaagacaatttg
gattatgttgttacacaattggaatcagagttaagcaaagcagctcgagatttgggattg
gaaaagggtaaaacgatcaaattagaatcgaacagcccactgggtcattattttcgtgtc
accttgaaggaggaaaaagcgctacgcaataacaagaagtacactaccgttgagacgaga
aaagatggtgtaagatttgtaaactcttctttaaaatcacttggcatcgaatataaatct
cataaagatacttattctgagttgcaaacacaacttgcgaatgaagttattaaaatagca
gctggttattcggatccattgcaaacgctgagtgatcaaatcgcttacctagatgtctta
ttaagctttgctacagtggcgtctcaagcacctacaccatacgttcgccctgtggtgcac
ccaaaaggtaaagggaaaattgttttgaaaggatcaaggcatccttgcttagaagctcaa
gatgatgtctctttcattgcaaatgatgttagcctaataaaagatgatcaagagtttctt
attatcactgggcccaacatgggtggaaagtctacctatatccgacaggttggtcttatc
actctaatggcgcaaataggtagttttgtaccatgtgatcaagctgaaataagcatagtg
gatagtattttagctcgagttggtgctggcgatagtcagttgaaaggagtatctacattc
atgtcggaaatgttggagacagcctccatattgagggctgctacaaaagattcgttaatt
attatcgacgaacttggacgcggtacatccacctatgatggatttggtttggcatgggca
atttcagagcacatttcgacgagcattaagtcattctgcgtgtttgcgactcattttcac
gagttgacatcacttgctgatgaaatatcaacagtacgcaatttccatgtcaccgcttta
acatcgaaagaacaattaactctattgtataaagttaaacctggtgtgtgtgaccaaagc
tttggtatacatgtcgcggaaatagctcatttcccgaaacacgtggtcgactttgctaaa
gaaaaggctaaggaattagaggacttccaagtgttatctaatgacaaggagtgtgaccag
tacaacgaagcattgtccggcgaaccagatgctaagaaacgtcgctctgagaaaaaggaa
ggagatgagataatcagaaaatttgtagaaaaattacgttccttacatgaagctaaactt
aacgatgacgaactggtgaagagtgtaactgcgataaaagaggaagtgttagcatgtgga
aaccaatacgtgattgacatactaaacaagtaa
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