Hydractinia symbiolongicarpus: 130645748
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Entry
130645748 CDS
T09218
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130645748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsy03041
]
130645748
03009 Ribosome biogenesis [BR:
hsy03009
]
130645748
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130645748
Spliceosome [BR:
hsy03041
]
Complex A
U2 snRNP components
U2 related factors
130645748
Complex B
130645748
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
130645748
Ribosome biogenesis [BR:
hsy03009
]
Eukaryotic type
90S particles
Helicases
130645748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
AAA_29
ABC_tran
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
130645748
NCBI-ProteinID:
XP_057307820
LinkDB
All DBs
Position
5:complement(26925250..26952720)
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AA seq
727 aa
AA seq
DB search
MSDRKRRLDVDGSSSHHKKNREEEMRKQVLSSSFAIQQNQLVVTGLKEHVPKLNPFTQRP
FSDRFQAILKKRLQLPVWEYRDEFIKMTTENQCVVLVGETGSGKTTQIPQWSLDLVLLGR
RKHVCCTQPRRVAAMSVAQRVADEMDVVLGQEVGYSIRFEDCSSARTALKYMTDGMLLRE
AMTDPLLDRYGVIILDEAHERTLATDILMGLIKEVVKQRPDLKVIVMSATLDAGKFQGYF
DDAPLLTVPGRTFPVEIFYTPEPERDYLEAAIRTVVQIHLCEEVEGDVLLFLTGQEEIDE
ACKRIKREIDNLGPEVGDMKIIPLYSTLPPNLQQRIFEAAPPNKPNGGIGRKVVVSTNIA
ETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVSAISKASAQQRAGRAGRTKPGKCFRL
YTEKAYKSEMQSNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLN
YLNALDDDGDLTELGSMMAEFPLDPQLAKMVIASTDFNCSNEALSIVAMLSVQQVFMRPN
DAKKAADESKMKFAHIDGDHLTLLNVYHAFKQNHEDTQWCYDNFLNLRSLKSADNVRQQL
ARIMDRFNLKRTSTDFNSREYYINIRKSLVTGFFMQIAHLERTGHYLTVKDNQVVQLHPS
TCLDHKPEWVLYNEFVLTTKNYIRTCTDVKAEWLVRTAPNYYDMNNFPNCEAKRVLERII
ERMKKGK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcgaaaacgacgcttagatgtggatggctcatcttctcatcataaaaaaaat
agggaagaagagatgcgaaagcaagtgctttccagcagttttgctatccaacagaaccag
cttgttgttactggcctaaaagagcatgtgccaaaattaaatccatttacacaaagacct
tttagtgatagattccaagccatattaaaaaaacgtttacaattgcctgtatgggaatac
cgtgatgaattcataaaaatgacaactgaaaatcagtgtgtagtacttgttggggaaact
gggagtggtaaaacaacacagatccctcagtggagtttagatttggttttgttaggcaga
cgtaaacatgtatgttgtacacaacctcgtcgagttgctgccatgagtgtagcccaacgt
gttgcagatgaaatggatgtggttcttggacaagaagttgggtattccattcgttttgaa
gactgctcaagtgctagaactgcgttaaaatacatgacagatggtatgttactaagagaa
gctatgactgatcctctactcgatcgttatggagttataattctggatgaagctcatgaa
aggactctagctactgatatcttaatgggtttgataaaagaggttgttaaacaaagacca
gatttaaaagtcattgttatgtcggctacgttagatgcaggaaagtttcaaggttatttt
gacgatgcaccattacttactgttcctggccgtacatttcctgtggaaatattctacaca
ccagaacctgaacgagattatttagaagcagcaattcgaacagttgttcaaatacatctt
tgtgaggaagtggagggggatgtcttgttgtttttaactggacaagaggaaattgatgaa
gcatgtaagcgtattaaaagagaaattgacaatcttggtcctgaagtgggtgatatgaaa
attataccactatattcaacattgccacctaatttgcaacaacgtattttcgaagccgct
cctccaaataagccgaatggtggtattggaagaaaagtcgttgtgtcgaccaacattgca
gaaacatcattgactatagatggtgttgtttttgtgattgatcctggcttttcgaaacag
aaagtatacaatccaagaattcgagtcgaatctcttttagtgagtgctatatcaaaagca
agtgcacaacagagagcaggacgtgctggaaggactaaacctggcaagtgtttcagatta
tacactgaaaaagcttacaaatctgaaatgcaaagcaacacatatccagaaatattgaga
tcgaatcttggttcggttgtgttgcagttaaaaaagcttggaattgatgatcttgttcat
tttgattttatggatccaccagcacctgaaactctgatgagagcattagaacttttgaat
tacttaaatgcacttgatgatgatggcgatttaactgagctgggctccatgatggcggag
tttccactagatccacaactggccaaaatggttatagctagcactgatttcaattgttca
aatgaagcgctctccatcgtggccatgctgtctgttcaacaggttttcatgcggccaaac
gatgcgaagaaagcggccgatgaatcaaagatgaagttcgctcatattgatggtgatcat
ctcacattactcaatgtctaccatgcttttaaacagaatcatgaagatacacaatggtgt
tatgacaacttcttgaatttgcgatctttaaaatccgctgataatgttcgacagcagtta
gctcgcattatggatcgatttaatctgaaacgaaccagcacagattttaatagcagagag
tattacataaatattcgcaaatccttagtgactggtttcttcatgcaaattgcacatttg
gagaggactggacactatctgactgtaaaagacaatcaggtggtccaactgcatccttcg
acttgtcttgaccacaaacctgaatgggtactctacaatgagtttgtgttaacaacaaag
aattatatacgaacatgtacagatgtcaaagctgaatggttggttcgcactgctccaaat
tattacgacatgaacaactttcctaactgcgaagctaagagagtgctcgaaagaataatc
gaacgaatgaaaaaaggaaaatag
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