Hydractinia symbiolongicarpus: 130645965
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Entry
130645965 CDS
T09218
Name
(RefSeq) uncharacterized protein LOC130645965
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130645965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130645965
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130645965
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130645965
Messenger RNA biogenesis [BR:
hsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130645965
DNA repair and recombination proteins [BR:
hsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130645965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
DUF3725
Motif
Other DBs
NCBI-GeneID:
130645965
NCBI-ProteinID:
XP_057308075
LinkDB
All DBs
Position
5:11600308..11602617
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AA seq
531 aa
AA seq
DB search
MENIIQLFSKLRLALEKGFDPNFVLKPKQIICFEQLINGNDTLAVLPTGYGKSILYQLLH
FVMPLQKKRNIVIVVSPLNAIIEDQQKILSQRGVEVATLTYEREECTEDPFAHLNTEDPV
EPNFKVSHEIKNGDIDFLFGHPEAFLSHTGRNLLKSKIYQDNVVACVVDEAHCVELWGLE
FRKSFQDLVVLNTIFQDRSMLALTATAGDKMISKIIKDLSLQNCKIVKASPNRRNVFLSV
KKRLPNNYGVKSYEQILLLIATELNETRRDYPITIIYMGLKYCGYAYKLFDMVIENPFCE
NEITPRAKLYAQFHASTTSCMKEDILEELKSLNSRIRVVFATTAFGMGVNVPQVTNIIHI
SPPSKLESYIQEIGRAGRNGAQSNAILYYNNSDISKNNLKMDESIKKYCQETDCLRKSLL
KYFSFKCETQDNCCENCNPTTTEDFSPVHHIQMSDIDRESIRLELEMINVEKEEDSHLLT
FEFNLTHDVIGKISNNFHLITCERDLLHKFDVWDERYSTKIFDVIRKYLNL
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatataatacaacttttttccaaacttcgacttgctctagagaaaggttttgac
ccaaattttgtgttaaagcccaaacaaatcatttgctttgaacaactaattaatggaaac
gatactcttgcggttttgcctactggatatgggaaatccattttgtaccagttacttcat
tttgtaatgcctttacagaagaaaagaaacatagtgattgttgttagccctctcaacgct
atcattgaggatcaacaaaaaattttgagccaaagaggtgtagaagttgctacacttact
tatgaaagggaagaatgtacagaagatccttttgcacatttgaatacggaagatcctgtc
gaaccaaatttcaaagtttcacatgaaataaaaaatggagatattgattttttatttgga
catccagaagcatttttgtcacacacaggaagaaatttactaaaatcaaaaatttatcag
gataatgttgttgcatgtgtagtagacgaggcacattgtgtggaattgtggggactggaa
tttagaaaaagctttcaagatttggttgtcttaaacaccatctttcaagatcgctctatg
cttgcattaaccgcaactgcgggagataaaatgatttccaaaattataaaagacttatct
ctacagaactgcaaaattgtaaaagcctcaccaaatcgtagaaatgtgtttctaagtgta
aaaaaacgacttccaaacaactatggtgtaaaaagttatgaacaaattctattactaata
gcaacagaattaaacgaaacaagacgagattaccctatcacaattatatatatgggttta
aaatattgtggatatgcatataaactttttgatatggttattgaaaatcccttctgtgaa
aacgagataactccaagagctaaattgtatgctcaatttcatgcatcaaccacttcgtgt
atgaaagaagatattttggaagaattgaaatccttaaactctcgaataagggtagtattt
gcaaccactgcttttggtatgggtgttaatgtacctcaggttactaacattattcatatt
tctcccccatcaaaactggaaagttacatacaagaaattggacgtgcagggagaaatggt
gcacaatcaaatgccatattgtactacaacaactctgacatcagtaaaaataatttaaaa
atggatgaatcaattaaaaaatattgtcaagagactgattgtctcagaaaatcattgctc
aaatacttcagttttaaatgcgaaacacaagacaattgttgtgaaaactgtaatcctacg
acaactgaagatttttctcctgttcatcatatacaaatgtcagatattgatagagaatca
atacgtttagagctagaaatgattaatgttgaaaaggaagaagactctcatttattaaca
tttgagtttaatttgacacatgatgttattggaaaaatttccaacaattttcatttaata
acttgtgaacgtgatttattgcataaatttgatgtttgggatgaaaggtattcgacaaaa
atttttgatgtcatcagaaaatatttgaatctataa
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