Hydractinia symbiolongicarpus: 130647336
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Entry
130647336 CDS
T09218
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03030
DNA replication
hsy03410
Base excision repair
hsy03420
Nucleotide excision repair
hsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130647336
03410 Base excision repair
130647336
03420 Nucleotide excision repair
130647336
03430 Mismatch repair
130647336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsy03032
]
130647336
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130647336
DNA replication proteins [BR:
hsy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130647336
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130647336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
AAA_30
AAA_14
PTCB-BRCT
RuvB_N
BRCT_2
AAA_17
nSTAND3
AAA_16
RNA_helicase
ATP-synt_E_2
AAA_33
Motif
Other DBs
NCBI-GeneID:
130647336
NCBI-ProteinID:
XP_057309131
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All DBs
Position
6:complement(18738801..18775268)
Genome browser
AA seq
1155 aa
AA seq
DB search
MNDIRSFFGAPNTKKNRPSKESVKEILKKPANDSKEKGIGDKNKKRKNLRLTIESESDSD
HEEPLPSKLRKNKNSKDQGKGSKKTPLKTPSKNRSEENDDDIVVTYQTPGKHGTKKASAK
KQSSVKKLITPKKEVLQPTTAEDFFSSTTSVKRKKPEDDSSDSIEKSEDKSKKPVTEIDI
KDDNMDDPPSKKVKKDAKIQSIQKACRTSPRKKTKAVEQSPVKGTAKSPQKVKKDVKMQS
VQKPTRTLQQKKASVLSNNDNNDDNDEIIEPTPPPSKKANASKTSSLASKLSTKVRTTES
KTDQVDPVESKMKDSVQKYLKQAKDVDKEKAKNQPDTNKTPQREKSSPKPVSPSATTPLT
AASLPSHTPDGNKTPNTPHTDETPVAQKKTNYRAYINREGPSALGSKEMPVGAEDCLQGL
TFVLTGVLDAFERDDIVDCVKRYGGKVTTSVSGKTSFVIVGKDPGQSKMEKALKHKTHQL
SEDEFLELVRTRPGKKWTSPNIEPNKTTSKKLNMQGLTPESPMTIDGSQSSNNSESISEF
SQSQKSQNTPKSFVSVHSQKSALSSPTSQNTQSPVVSSPNLSQGVPSLLWVDKYKPKAMK
NIVGQQGDKSNANKLRKWLLRWQDNNAPGKKTKSNFYAGKDDGSIFRAALLSGPPGVGKT
TSATLVCQDAGFSFIEMNASDTRGKKALETVIKESLSNVTVNGMLQGSNNGGKNHVLIMD
EVDGMAGNEDRGGMQELIQLIKKTRIPIICMCNDRNHPKVRSLANHCFDLRFYKPRVEQI
KGFALSIASREGLKIPPQAMEQIVVGANQDIRQVVHNLQMWTATSNKLSYDDAKAEANNA
KKNIKMGPFDVIKTLFTHSEASKMSINQKSDLFFMDYSFIPLFMQENYLGVNPSEGRGDM
QKILDAVSDTADAIADGCLVENLIRTRQQWSLLPLQGLFSTVLPSMKMSGHLGQRIEFPQ
WLGKNSSRTKHDRILQELKTHMALSCNCMKTDINMDYISTLKNRLKQPLLEKDADANAAA
KEVIDLMDQYNLTREDWDSVMEIGKWGKESDDTAKIPTKVKSAFTRLYNKDVHKTPYAVH
QAAKKTKIASTDGVLLGEDDDQADVDDEEDNGDDDDISKDAMIKMKKEPVAGFSAKGKGK
KQAGKSKPTKGKSKK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacattcggagcttctttggtgctccaaacaccaagaagaatagaccatctaaa
gagtcagtgaaggaaatcttaaagaaaccagcaaatgattcgaaagaaaagggaattgga
gataaaaacaagaaaagaaagaacctaagattaactatcgaatcagaatctgattcagac
catgaggaaccattaccatcaaagttgagaaaaaacaaaaatagcaaagatcagggaaaa
ggtagtaagaagactcctttaaagactccttcaaagaatcgtagtgaagaaaatgatgat
gatattgttgtcacatatcaaactccaggaaaacacggcactaaaaaagcatctgctaaa
aaacaatcatcagttaaaaaattaataacacctaaaaaagaagtgttacaaccaactact
gctgaagatttcttttcctccaccacttcagttaaaagaaaaaagccagaagatgattca
tctgattccatagaaaagagtgaagacaaatctaaaaaacctgtcactgaaattgatatt
aaggatgataacatggatgatccaccatctaaaaaggtaaagaaagatgcaaagatacag
tctattcagaaagcatgtaggacttcaccacgaaagaaaacaaaagctgttgaacagagt
cctgtaaaggggactgcaaaatctccacagaaggtaaagaaagatgtaaagatgcaatct
gttcagaaacctactaggactttacaacaaaagaaagcatctgttttatccaataatgat
aataatgatgacaatgatgaaattattgagccaacaccaccaccttcgaaaaaggctaat
gcatcaaagacttctagtttagccagcaaactttcaaccaaggttagaacaacagaatcc
aaaacagaccaagttgaccctgtggaatctaaaatgaaagactcggtacagaagtacctg
aagcaagcaaaagatgttgacaaggagaaagcaaaaaatcaacctgatacgaataaaaca
ccacagcgagaaaaatcttcaccaaaaccagtttctccaagtgcaacaacaccattgact
gctgcttctttaccctcgcatacacctgatggcaacaagacaccaaatactccacacaca
gatgaaacgcctgtggcgcagaaaaaaacaaattatcgggcttacataaatagagagggt
ccatcagcattagggtcgaaagaaatgcctgtgggtgctgaggattgcttgcaaggatta
acttttgtacttactggtgttcttgatgcatttgaacgtgatgatattgttgattgtgtc
aaacgttatggtggtaaagtcaccacgtcggtcagtggcaaaaccagttttgttattgtc
ggaaaagatcctggtcagtcgaaaatggaaaaggcgttaaaacataaaacccatcaactg
agtgaagacgaatttctggaactggtgcgcacaagacctggcaagaaatggacttcacct
aacattgaaccgaataagacaacgtcgaagaaattgaatatgcaaggcctcacacccgaa
agtccaatgacaatagatggtagtcagtcaagcaataattcagaaagtatctcggaattt
agccaatctcaaaagagtcaaaacaccccgaagagttttgtttcggtgcattcacaaaag
agtgcactatcgtcacctacatctcaaaacacacaatcacctgtggtgtcgagtccgaat
ttgtcacaaggtgtcccgtcgttgttatgggttgataaatataaaccaaaagcaatgaag
aatattgttggccagcaaggtgacaaaagcaatgctaataagttgagaaaatggctgttg
cgttggcaagacaacaatgcaccaggaaaaaagacgaaatcaaatttttatgcgggcaaa
gatgatggttcgatatttagggcagctttattatcaggcccgcctggtgtgggcaaaacc
acgagtgctactttagtttgccaggacgctggcttttctttcattgagatgaatgcaagt
gacacacgtggaaagaaagcgcttgaaactgtcatcaaagaatctctttcaaatgtgaca
gttaacggaatgctgcaaggttcaaacaatggtggaaagaatcatgtattaattatggac
gaagttgacggtatggctggtaatgaagacaggggtggaatgcaggaacttattcagttg
atcaagaagacaagaattcctatcatttgtatgtgcaacgatcgaaaccatcctaaagtt
cgcagtcttgccaatcactgttttgatcttcgcttctataaaccacgtgttgaacagatt
aagggatttgcactcagcatagccagcagagaaggtttaaagatacctccacaagccatg
gagcagattgtggtgggtgctaaccaagacatacgacaggttgtacataaccttcagatg
tggacagccacaagcaacaaactgtcctacgatgatgcaaaggctgaagctaacaatgca
aagaagaatattaaaatgggaccatttgatgtaatcaagacgttattcacgcatagtgaa
gcatcgaagatgtcgataaatcaaaagtcggatttgtttttcatggattattctttcatt
ccgctttttatgcaagaaaattatctgggtgtcaatccgagcgaaggaagaggtgacatg
cagaaaatattggatgctgtaagcgacacggctgatgcaatcgcagacggctgtcttgtc
gagaatctgatcagaacccggcagcaatggagcttgctacctctacagggtttgttttct
actgttttaccttccatgaaaatgtctggacatttgggacaacgcatcgagtttcctcaa
tggcttggtaaaaactccagtcgtactaaacacgatcgaatcttacaagagttgaaaaca
catatggctttgagctgtaactgcatgaaaacagatataaacatggattatatatcgact
ttaaaaaaccgcttgaaacaaccattgctagaaaaagatgctgacgccaatgcggcagct
aaggaagtcattgatcttatggatcagtataatttaacaagagaagactgggattccgtt
atggaaatcggaaaatggggtaaggaatcggatgatacggcaaagattccaaccaaggta
aaatcagcgtttacacgtttgtataacaaagacgttcacaagacaccttacgctgtgcac
caagctgccaaaaaaactaaaattgcttcaactgacggtgttctacttggagaagacgac
gaccaagcagatgttgacgatgaagaagataatggtgatgatgatgacatcagcaaagac
gccatgattaaaatgaagaaagaaccggttgccggtttttcggcgaaggggaagggcaaa
aagcaagccggtaaaagtaaaccaacgaaagggaaaagtaagaagtga
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integrated database retrieval system
