Hydractinia symbiolongicarpus: 130647389
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Entry
130647389 CDS
T09218
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130647389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130647389
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130647389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
AAA_29
Motif
Other DBs
NCBI-GeneID:
130647389
NCBI-ProteinID:
XP_057309213
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All DBs
Position
6:19546855..19580158
Genome browser
AA seq
1297 aa
AA seq
DB search
MKNLLNYFKKSPKSVPNRAVCTNNVKDNSTTLQYVAGEIVWAKFEGFPYWPGMICEDPNS
KSCKQVKENVAMFHVQFFGEEPTHEWVIRSKIEAFDTRQPTDNDGDMKIAYDQAVDASKQ
STKERIDNFYACVVSDDDDTKENNNTSMEIKNSINGKSKKRTISDSTSKSRKRIKMSIES
ESEDMESEDEDSSYEPDSDDGKNDDGDYKSDEVESEVEEDDDDVAEDEEVKSKKRKTRKS
VGTPTSIKKRKEDNNNNNNVKRKSVSSNNSSFLTPVKPINLNNSISKAQSTLAKFSSPSV
ASSPSQSFECTEQQFTHLSLKFLWDGHRKDKNGNLHTHSEYDSRTLHVPDSYINSKEVTP
GMKQWWQIKINNYDTILFFKVGKFYELYHMDATVGVKELGLIYMRGKFAHCGFPEIAFSR
YSEVLIQRGYKVARVEQTETPQSLSARGGGKVVRREVCAVISKGTRTFSFMEGQSDSDVS
SYLLAFIEKPCQDVCLGGSVFGVCFVDTSIGKFHLGQFKDDRQCSRFLTMISQFPPAQIL
YERHNLSPKVKHILNHELLPAIKDPLTPGTEFWNASKTLKHLYEKNYFNDEDKAASIEWP
PLLKQMLSNADSLGLEASEDYQYAISSLGACTWYLKKCCIDQELLSMSQFEEYVPADNIT
KRKIDHSMPQYMILDGVTLTNLDIVVNTDGTTEGTLLELLDHCATPFGKRYFIQWLCSPS
CSKKSIESRLDAIENLMTNSSLMHEVKEIMKTMPDLERILRRIHSLGSVRRSQDHPDSRA
VFYNEETYSKKKIGDLISALDGFTKASQVVEILQANLSLLSSTWLKSLLIKDENNTVGKY
PDMSSTLKFFQHAFDHKKAKETGTIHPKKGVHPAYDSAMNEINLLKDKLDDYLKQQRKRM
GCSSINYWGTGKNRYQLEIPESALRSSPPNDYHLKSQKKGFKRYSSDKIDELNEQLTAAE
ESRDAALKDTMRNIFNQFDKEYSKWETAVRCLATLDCLMSLACYSNNIDGVSCRPEIIDP
IDEEGNEIQPFFELLNCRHPCISQKALNGGDFIPNDIVLGKQAGSSSTSPSCVLITGPNM
GGKSTLMRQAGVILIMAQLGCHVPAEVCRFTPVDRVFTRLGARDRILHGESTFFVELSET
STIFQHATKHSLVLLDELGRGTATYDGTAIASAVVHDLANRIGCRTLFSTHYHSLVEEFS
QDVNISLGHMACMVEKDEEDDDPTNETITFLYKFTSGACPKSYGFNAAKLAGLPLSIIKS
AHAKAALFETSTKNSRLLRSVLNSSAEQLRGRLQQVI
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatttattaaattacttcaagaagtctccaaaatctgttcctaacagagctgtt
tgtaccaacaatgtcaaagataacagtacgacattgcaatatgtcgctggtgaaatcgta
tgggcaaaatttgagggatttccatattggcctggcatgatatgcgaggaccctaatagt
aagtcatgcaaacaagtaaaggaaaatgtggcgatgttccatgttcaattttttggtgag
gaaccaacacatgaatgggttataagaagcaaaattgaagcatttgatacgagacaacct
acagacaatgatggggacatgaaaattgcttatgatcaagctgtagatgccagcaagcaa
tcaaccaaagaaagaattgataacttctatgcatgtgtagtgtctgatgatgacgataca
aaagaaaacaacaataccagtatggaaattaaaaattcaatcaatggaaagtcaaaaaag
aggactatatcagattcaacttcaaaatcacgaaaacgcatcaaaatgtctatagaatca
gagagtgaggatatggaaagtgaagacgaagacagttcctatgaacctgattctgatgat
ggaaaaaatgatgacggggattataaatcagatgaggttgaaagtgaagttgaagaagat
gacgatgatgtggcagaagacgaagaggttaaatcaaaaaagagaaaaaccagaaagagt
gttgggacaccaacttccatcaaaaaaagaaaagaagacaacaataacaacaacaatgtc
aaaagaaaaagtgtttcgtcaaataattcatcatttttaacacctgtcaagccaataaat
ttaaacaattccatatcaaaggctcaatcaacattggctaaattttcgtcaccctctgtt
gcatcaagtccttcacaaagttttgaatgtaccgaacaacagttcacgcatctatcgcta
aaatttttatgggatggtcatcgaaaggataaaaatggtaacttgcacacacattcagaa
tatgattcacggacattacatgtaccagacagctatataaactcaaaagaagtaactcct
ggtatgaagcagtggtggcaaataaagattaacaactatgataccatcttgttttttaag
gttggaaagttctatgagctatatcatatggatgcaactgttggtgttaaagaacttggt
cttatttacatgaggggaaaatttgctcattgtggatttccagaaattgctttttcacgg
tactcagaagttctgatccaaagaggctataaggttgcaagagttgagcaaacagagaca
ccgcaatcactcagtgcaagagggggtggcaaggttgtccgaagagaagtctgtgctgtc
atcagtaaaggcacaaggaccttcagtttcatggaaggacaatctgactccgacgtgtca
tcatatcttctagcttttatagaaaagccatgccaagatgtttgtcttggtggcagtgtc
tttggtgtgtgtttcgtagatacgtcaattggtaaatttcatctcggccagtttaaagat
gatcgtcagtgttccagatttttaacaatgatatctcaatttcctcctgcacagattctt
tatgaaagacacaatctttcaccaaaagtaaaacatatattgaatcacgaactacttcca
gcaataaaggacccactgactccaggaactgaattttggaatgcatcaaaaacattaaaa
catttatacgaaaagaattatttcaacgatgaggacaaagcagcttcaattgaatggcca
ccacttttgaaacagatgttgtctaatgccgattcacttggattagaagcttctgaagat
taccaatatgcaattagttctcttggtgcttgtacttggtatttaaagaaatgctgtatt
gatcaggagctgttgtcaatgtcacagtttgaggagtacgttcctgcagataatatcacg
aaaagaaaaattgatcattcaatgccacaatatatgattttggatggagttacgctaaca
aatctcgacatcgttgtaaatactgatggaacaactgagggtacccttttggaattgctt
gatcactgtgcaacaccttttggaaagagatattttatccaatggctttgttcaccttcg
tgcagtaagaagtcaattgaaagcagattggacgcgatagagaatttaatgacaaattct
tctctgatgcatgaagtgaaagagataatgaaaacgatgcctgatctagaacgtattttg
agaagaattcacagtcttggatcagtgagacgcagtcaagaccatccagatagtagggca
gtgttttataatgaagaaacatatagtaaaaagaaaataggcgatttgatatctgcatta
gatggttttacgaaagcttcgcaagtggttgagattttacaggctaatttatccttgctc
agctcaacgtggcttaaatcgctcttgataaaagatgaaaataatactgttggcaaatat
ccagatatgtcttccactttaaagttttttcagcatgcttttgatcataaaaaggcaaaa
gaaactggaaccatacatcctaagaaaggtgtccatcctgcgtatgattccgccatgaat
gaaattaacttgctcaaggataagttggatgattatttgaaacaacaacgaaagaggatg
ggatgttcaagcataaattattggggaacaggaaagaaccgatatcaacttgaaattcct
gagtcagcacttcgctcttcccctccgaatgattaccatttaaaatctcaaaagaaagga
tttaagcgatatagctctgataaaattgatgagttgaatgaacaattaacagccgcggag
gagagtcgtgatgctgcgttgaaagacacaatgcggaacatcttcaatcaattcgataaa
gagtattcgaagtgggaaacggctgtgcgatgtttggccactttggactgcttgatgtcg
ttagcttgttacagcaacaatattgacggagtttcgtgccgtccggaaattattgatcct
attgatgaagaggggaatgaaatacagccattttttgaactattgaattgtcgtcatcca
tgcattagtcagaaggctttgaatggtggcgatttcataccgaacgatattgtgttggga
aaacaggctggaagtagcagcacttcaccaagttgtgtgttgataacaggtccaaatatg
ggcggaaaatcaactttaatgcgccaagcgggcgttatacttatcatggcgcaacttggt
tgtcacgtaccagcagaggtgtgcagattcactcctgtggatagagtattcacaagactt
ggtgctagggacaggattcttcatggtgaaagcactttctttgtggagctgagtgaaaca
tcaacaatattccaacatgcaaccaagcattctttagtattgctggacgagcttggtcgc
ggtactgcgacgtacgatggcaccgctatcgcttccgccgtcgtgcatgacttagccaac
agaatcggttgtcgtacattattctctactcattaccattctttggtggaagagtttagt
caagatgtcaacataagtctcggacacatggcttgtatggtagaaaaggatgaggaagac
gacgaccctacgaacgaaacaatcacctttctttataaattcacatctggagcgtgtcca
aaaagttatggtttcaatgctgctaagcttgctggcttgcccctatctataataaaatct
gcacacgcgaaagcagccttgttcgaaacttcgacaaaaaacagtcgtttattgaggtct
gtgctcaattcgtctgctgaacagttgagaggtcgtctgcaacaagtaatctga
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