Hydractinia symbiolongicarpus: 130647804
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Entry
130647804 CDS
T09218
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03015
mRNA surveillance pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130647804
09123 Folding, sorting and degradation
03018 RNA degradation
130647804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130647804
03041 Spliceosome [BR:
hsy03041
]
130647804
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130647804
mRNA cycle factors
Stress granule specific factors
130647804
Spliceosome [BR:
hsy03041
]
Complex C
Other components
Complex C specific factors
130647804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_7
RRM_occluded
RRM_3
ApbA_C
Motif
Other DBs
NCBI-GeneID:
130647804
NCBI-ProteinID:
XP_057309768
LinkDB
All DBs
Position
6:complement(25241171..25248887)
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AA seq
627 aa
AA seq
DB search
MNQQGTPNYPIASLYVGDLNPDVTEAMLFEKFSATGPVLSIRVCRDLVTRRSLGYAYVNF
QQPADAERAIDTMNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDTF
SAFGNILSCKIATDGKGSSRGYGFVHYETKEAAQEAIAKVNGMMLNDKKVFVGEFMSKRE
RLEKLGDQAKKFKNVFVKNFGDTLDEEKLREMFSTCGEITSCVIMTDEEGKSKGFGFVAF
ESHEAADKAVDDYNDYEIQDRKITVCRAQKKQERSMELKNRFEAQKMERINRYQGVNLYI
KNLEDGIDDEKLRSEFSTYGTITSAKVMKDDKANSKGFGFVCFSSPDEATKAVTEMNGRI
LVTKPLYVALAQRKEERRAQLSTQFMQRVGPLRYSGSGMPQQPGYSFQGGQPGFYIPSMP
QGQRAFITQPVNQMTRPRWQSPRPMNTSYPPVGQMRGARPPRHQTNMPRRDAPYQPGMGG
RGVPGQQIMRPAGPPQQQQRGAYKLTSNTRNQYPGQVMQQAPAEQAPVQVMQGAHEPLTA
SILATATPSEQKQMIGERLFPLVQEYRPQLAGKITGMLLEIDNTELLHMLESRELLSSKV
EEAVQVLQAHQAKEAAATAAGTAVEKK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaacaaggaacaccaaactatcccatcgcatctctttacgttggagatctgaat
cctgatgttactgaagctatgctgttcgaaaagttcagtgctactggtccagtgttgtcc
atacgagtttgtcgtgacttagtcactagaagatctcttggctatgcatacgtaaatttt
caacaaccagcagatgctgaacgtgctatcgatacaatgaattatgatcctattaagggt
aggccatgtcgtatcatgtggtctcaacgagatcctactcttcgtcgatctggagtaggg
aacattttcatcaagaacttagacaaaaacatagataacaaagggttatatgatactttc
agtgcttttggtaatattttgtcatgtaaaatagctactgatggaaagggctcttcccgt
ggttatggatttgtgcattatgaaacaaaggaagctgctcaggaggctatcgcaaaagtt
aatggcatgatgttaaatgacaaaaaagtatttgttggtgagtttatgtcgaagagggaa
cgacttgagaaacttggtgatcaagccaagaaatttaaaaatgtttttgttaagaacttt
ggtgacacccttgatgaggagaagcttcgtgaaatgttttccacctgtggtgagataact
agttgtgtcatcatgactgatgaagaaggaaaatcaaaaggatttggatttgtcgcattt
gaaagccacgaagcagctgataaggctgttgacgattataacgactatgaaattcaagat
aggaaaataacagtatgtcgagcgcagaagaagcaggagagatcaatggaactcaaaaac
agatttgaagcacaaaaaatggaacgaattaacagatatcaaggagtgaatctgtatatc
aaaaatcttgaggatggcattgatgacgagaaattacgttcagaattttccacgtatggt
actattacaagtgctaaagtgatgaaagatgacaaagcaaactctaagggatttggtttt
gtgtgtttttcatctccggatgaagcaaccaaagctgttactgaaatgaatggtcgtatt
ttggttactaaaccactgtatgtggctttggcacaacgtaaggaagagagaagagcccag
ctttcaacacagtttatgcaaagagttggtcccctcagatatagcggctctggtatgcca
caacaaccaggatattcctttcaaggtggccaacctggtttttacattccgtccatgcca
caaggacaacgcgcttttataacccaaccagttaaccagatgactcgcccaagatggcaa
tcacccagaccaatgaacacgtcttatccacctgtgggtcagatgagaggtgcacgccct
ccgcgacatcaaaccaacatgccacgacgtgatgcaccctatcaacctggaatgggtgga
cgtggtgtaccaggtcagcaaatcatgcgtcctgcaggacctccacaacaacagcaaaga
ggagcttacaaattgacatccaatacaagaaatcaatacccaggccaggtcatgcagcaa
gcaccagctgagcaagcgcctgtgcaagtgatgcagggtgctcacgaacctttgactgca
tccattcttgctactgccacacccagtgaacagaaacagatgattggcgaacgtttgttc
ccacttgtccaagaatatcgacctcagctagcgggaaagattactggaatgttgttagag
attgacaatactgagttgctgcatatgttagagtctcgggaattgctaagttccaaggtg
gaagaagcagtccaagtacttcaagcccatcaagctaaagaagcggctgcaactgctgct
ggtacggctgtagaaaagaagtaa
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