Hydractinia symbiolongicarpus: 130649352
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Entry
130649352 CDS
T09218
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130649352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130649352
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130649352
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130649352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Poty_PP
Motif
Other DBs
NCBI-GeneID:
130649352
NCBI-ProteinID:
XP_057311598
LinkDB
All DBs
Position
7:16394267..16407877
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AA seq
716 aa
AA seq
DB search
MADRRKLQGEVDRCLKKVSEGVEAFDDIWQKVQNATNVNQKEKYEGELKREIKKLQRLRE
QIKTWVASSDIKDKKTLLENRRLIEQQMEKFRVVEKETKTKAFSKEGLGQAKKVDPETKE
FVRCREWLNDAIQKLNLQIDQMEMEQESLHAGMKKKKPDKDKAERLAELTDRIEKHRYHI
SQLEHVLRMLDNESLEVDMVNKVKDDVDYYIENCQEPDFLDDEGIYDDLDLDHEGDLEGS
MKLDDKCEDDEIQSSPGSSLNSGYSCLTTSSPASKSNNNSPRKNSKNSTSSNTSLINGVA
SSSTTTTTVSSSSSSTPSKRNLFSSSHNNTSSVSTDSNTTEPISSVPMVNGLDHKTNAEN
TTTSSVSETKESNVPIAPYASAAAPETSSTNPGPISPKLTSAEETAVQVVRNHVESLKYT
GLNTSNPHWRSTASAITSDTNPTTPTVTSSSNTQTTTSDSSNLNNDDVMTSSQEAGPSLL
GSVSRSLSTTTAPQIQTSSQSIISYPSVSSVSQKIDEQLQPPTDFSLKTNSLFGGVINPP
TLPQKPPNSDTQEVRLQPVHGVAPLGPVLLTQERLYQLKMLDAAYHHLPQRQDGEKMRPY
ISRSAVPIASYHHHQPPPSIDTVEFFQRLSTETLFFIFYYQEGTRAQYLAAKALKKQSWR
FHTKYMMWFQRHEEPKRITDEFEEGTYIFFDYEKWSQRKRDGFTFEYRFLEDKDLP
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggctgatagaagaaaattgcaaggtgaagtcgatcgttgtcttaagaaagtcagtgaa
ggtgttgaagctttcgatgatatttggcaaaaagttcaaaatgctacaaatgttaatcaa
aaagagaaatatgagggagaattaaaaagagaaataaagaaactgcagcgattacgtgaa
caaataaaaacatgggttgcatccagtgacattaaagataaaaagacattattagaaaat
cgtagactaatagaacagcaaatggaaaagtttcgtgttgtcgagaaggaaaccaaaaca
aaagcattttcaaaagaaggcttaggtcaagcgaaaaaagtagatccggagactaaagag
tttgtgcggtgtagggaatggttaaatgatgcaattcagaagttaaatctacaaattgat
caaatggaaatggaacaagaatctctacatgctggaatgaagaaaaagaaaccagataaa
gataaagcagaacgtttggctgaattaacagatagaatagagaagcatagataccacata
tcacaactagaacatgtactacggatgttagataacgaatcactagaagttgatatggta
aataaagtgaaggatgatgtagattattatattgagaattgtcaggaacctgattttctg
gatgacgaagggatatatgatgatttagaccttgaccacgaaggtgaccttgaaggaagt
atgaaattagatgataaatgcgaagatgacgaaattcaatcttcaccaggttcatcatta
aattctggatattcctgtttgacaactagttctcctgcttctaaatcaaataataattca
ccacgcaaaaatagtaaaaactctacttcaagcaacacaagtcttataaatggtgtagct
tcaagttcaacaacgacaactacagtgtcatcatcatcatcgtccactccctcgaaacga
aatctcttctcttcaagtcataacaatacgtctagtgtgtctacagatagcaatacaacg
gaacctatatcaagtgttccaatggtcaatggtctagaccataaaacgaatgctgaaaac
accacaacatcaagtgtctctgaaacaaaagagtcaaatgtaccaatagcaccttatgca
agtgctgctgcaccagaaacatcaagtactaacccagggccaattagtccaaagttaaca
tcagcagaagagacagctgtgcaagttgtgcggaatcacgtggaaagtttgaaatataca
ggtttaaacacaagcaatcctcactggaggtctacagcgtctgctataacatctgatacc
aaccctactacaccaacagtaacatcttcttctaacacgcaaacaacaacatcagatagt
tcgaatctaaacaacgatgacgtcatgacatcctctcaggaagctggcccatccttgtta
ggatcagtgtccaggtctctttctacaacaacagcccctcaaattcaaactagtagccaa
agtattattagctacccatcagtgtcgtctgtgtcccaaaaaattgacgagcaattgcaa
ccacctacagattttagtttaaaaacgaacagtttatttggaggtgttattaatcctcca
acacttccacaaaagccacctaattcagacacccaagaagtgcgactgcaaccagtacat
ggtgttgctccactaggtccagttctgttaacacaagaaaggttatatcaactgaagatg
ttagatgcggcctatcaccatttaccacagagacaagacggtgaaaaaatgagaccatac
atttcaagaagtgctgtacctatcgccagttatcaccatcatcaacctccaccaagtatt
gatacagtagagttttttcaacggctgtcaactgaaaccttgttttttatattttactat
caggagggtactcgtgctcagtatttagcagcgaaagcactgaagaaacaatcatggaga
tttcacacgaaatacatgatgtggtttcaaaggcacgaagaaccaaaacgaattacagat
gagtttgaagagggaacgtatatcttctttgattatgagaaatggagtcagcgcaagcgc
gatgggttcacttttgagtatcgttttttggaagacaaagacctgccatga
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