Hydractinia symbiolongicarpus: 130655329
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Entry
130655329 CDS
T09218
Name
(RefSeq) nucleoporin p54-like isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130655329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130655329
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130655329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
PCDH15_12th
DUF6061
Motif
Other DBs
NCBI-GeneID:
130655329
NCBI-ProteinID:
XP_057314054
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All DBs
Position
8:24300604..24312762
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AA seq
537 aa
AA seq
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MAFSLGGNLGAATSTPAFSFGAAKTTAPALFGGLGSNTTAGFGQSSGTTTFGTTTTTASA
LFGGLGAQSTTSTGFGGFTGFGAKTTSSGFGGFGFGTTTTSAGTGFGSTSLIPGFGAKST
ATGFGLTTTQPTWSMGQQSTQQQQQVVENPLAIMTSALTMPTLFGDERDSIIAKLNQLQA
LWGQGKAYYANAPPIPFGPENPFSRFKSIGYSCLPTAKDSDGFVSLDLKHKEGYIKENQQ
QLVEALHKCLGSKPTLSVCVDGVRSLPSDRSEVVIYVVERQTNGSTRRILATELYAFLSQ
DNIKNQLKTMGVENLVAKTTFTESQLKQFLDTPPLCIDAILWEQAKKDNPDPATLIPVPM
LGFNELLTRLKHQQYQNTQHERRLDLISEEIDTLQKSHSTTIAKLAQYKRKHLELGHRVL
EVMINLESSRKIGYAIEPSEEQLRIQLESLQAELNAPMQFKGRLNELMSQIRLQSQINNR
QSSSAYSLDEHIKVEIKQHLTQQQNGLLQLISIIKDDFEDLKIIENGVMDSIYQPRR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttcgctaggaggaaaccttggggctgccacatccactcctgcatttagcttt
ggggctgcaaaaacaactgctccagcactgtttgggggactcggatctaacacaactgca
ggatttggacagtcaagtggaacaacaacttttggtaccacaacaactacagcaagtgca
ttatttggtggacttggagcacaaagtacaacttcaactggttttggaggctttactgga
tttggtgcaaaaaccacttcatctgggtttggtggattcggttttggaacaacaacgacc
tctgctggcactggttttggttctaccagtttaattccaggttttggtgcaaaatcgact
gctactggttttggtttgacaacaacacaaccaacatggtcaatggggcagcagtcaacg
caacagcaacaacaagttgtcgaaaatcccttggctataatgacaagtgccttgacaatg
ccaactttgtttggtgatgaaagagattccattattgcaaaattaaaccaactgcaagca
ctatggggtcaaggaaaagcttactatgctaatgcgccaccaataccttttggtccagaa
aaccctttctctagattcaaatcaattggctatagctgtttacctacagccaaggacagt
gatggctttgtgtcacttgatctgaaacacaaagaaggttacataaaagaaaatcaacaa
caactcgttgaagccctacataaatgtcttggaagtaaaccaacattatctgtgtgtgta
gatggcgtcagaagcttgcccagtgacaggtctgaagttgttatttatgttgttgaaaga
caaacaaatggctccacgcgaagaattttagccactgaactctatgcatttcttagtcag
gataacatcaagaatcagttaaaaacaatgggtgttgaaaacttggtagcaaagacaact
tttacagaatcacaattaaagcagtttcttgatactcctcctctatgtattgatgcaatt
ttatgggagcaagcgaaaaaagataatcctgatcctgcaactttaataccagtgcctatg
ttgggcttcaatgaattgttaactcgtttgaaacaccagcaatatcaaaatactcagcat
gaacgaagacttgacttaatttctgaagaaatcgatacactccagaaatcgcattcgacg
actattgcgaaattggcacaatataaacgtaaacatcttgaactgggtcatagagtgctg
gaggtaatgatcaatttagaaagttcgcgaaaaatcggatatgcaattgagccatctgaa
gagcaactaagaattcaactagagtctctacaagcagaactcaatgcgccaatgcaattt
aaggggcgtttgaatgaactgatgtcgcagatacgtttacaatcacagattaataacaga
cagagcagttcagcgtactctttagatgaacatatcaaagtagaaattaaacagcatctc
acgcagcaacaaaacggccttctacaactcatatcaataataaaagacgatttcgaagac
ttaaaaatcattgaaaatggcgttatggacagcatataccaaccacgtcgatga
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