Hydractinia symbiolongicarpus: 130656494
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Entry
130656494 CDS
T09218
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130656494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130656494
03041 Spliceosome [BR:
hsy03041
]
130656494
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130656494
Spliceosome [BR:
hsy03041
]
Complex B
Other components
Prp19-related factors
130656494
Complex C
130656494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_8
TPR_19
TPR_2
ARM_TT21
ARM_TT21_4th
ARM_TT21_C
TPR_12
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
130656494
NCBI-ProteinID:
XP_057315340
LinkDB
All DBs
Position
9:15262929..15275322
Genome browser
AA seq
855 aa
AA seq
DB search
MVELIKERKPVKGALVLEDVDLPYEEEILRHPYSVKCWMRYIEHKISHGGKGHAVNILYE
RALKELPGSYKLWYNYLRLRRLQTKGKCITDPLFEDGNNAHERGLVFMHKMPRIWLDYCQ
FLMDQKLITQTRHAFDRALRALPITQHSRIWPKYLAFVNKYDIPETAVRVYRRYLKLEPE
NTEAYIDYLMDIGWLDEAALKLASIIDQEKFVSKKGKSNHQLWHELCELISKNPDKVKSL
KVADIIHGALRRFTDGLGQLWCSLADYYIRGSHFEKARDVYEEGIQTVMTVRDFGEVFDA
YAQFEESMISAKMEESQETGLDADGEVDLELRLARFEVLMDRRPLLLNSVLLRQNPHNVH
EWHKRIQLHEDKPHEVINTYSEAVQTVDPMMASGKPHTLWVEFAKFYEKHEQLKEARIVF
EKALKVKYRHVDDLASVWCEYAEMEIRNDNYDQALKVLRRGTSVPRKKIGTSYYDQKEPV
QSRVHKSIKVWSMYADLEESLGTFQSTKAVYNRIIDLRIATPQIIINFSAFLEEHKYFEE
SYKAYERGIALFKWPHAYDIWNTYLSKFIKRYGGSKLERTRDLFEQCLEKCPEKFAKFFY
LMYAKLEEDYGLSRHAMAVYERATKAVPKSEQYEIFNIYIKRASEMFGITHTREIYEKAI
EALPDQNARDICMRYAELETKLGEIDRARAVYSYGSQMCDPRLTANFWKAWHDFEVKHGN
EDTFREMLRIKRSVQAQYNTQVNFMSAQLLASQANAETATKNEMEKLEEKAAALAEDAEK
DRPAPPQTQPPSKSVLFVRGETQAESLADVESTNNPEEIELAEDSDDESSEDDGDVRLEQ
KEIPEEVFGGIKKSD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtagagttgattaaagagagaaagccagtaaaaggtgccttagtactggaggatgtt
gatttgccatatgaggaagaaattcttcgtcatccatattcagtaaaatgttggatgcgc
tatattgaacataaaatttcacacggtggtaaaggacatgctgtaaacattctttatgaa
agagcattaaaagagcttcctggaagttacaagttatggtataattatttgagattaaga
agattacaaacgaaagggaaatgtattactgatcctttatttgaggatggaaataatgct
catgaacgaggcttagtttttatgcacaagatgcctcgtatttggttagattattgtcaa
tttctgatggaccagaaactgataacacaaacccgacatgctttcgaccgagcattaaga
gctcttcccattacgcagcattcgagaatatggcctaaatatcttgcttttgtcaataaa
tatgatatacccgaaacagcagtaagggtttaccgtcgatacttaaagctggaacctgaa
aacacagaagcttatatagattatttgatggatatcggatggttagacgaagctgctcta
aaacttgcatctattatcgatcaggaaaaatttgtgtcgaagaagggaaaatcaaatcat
cagttatggcatgagttatgcgagttaatatcaaaaaatcctgacaaggtcaaaagttta
aaggtggctgacattatccatggtgctttgcgaagattcacagacggattagggcagctg
tggtgttcgttagcagattattacatccgaggaagtcacttcgagaaagcacgtgatgta
tacgaggaaggtatacagacagtgatgacagttcgagattttggtgaggtattcgatgct
tatgcacaattcgaggagagcatgatcagtgcgaagatggaagaatcacaagaaactgga
cttgatgctgatggtgaagtcgatttggaattacgtttggcaagattcgaagtgctcatg
gataggcgacctttacttttaaacagtgtactactccgtcaaaaccctcacaatgtgcac
gaatggcacaaacgtattcagcttcacgaggacaaacctcacgaagttatcaacacttat
tccgaggcagtgcaaacagtcgatcccatgatggcgtctggaaagccgcacactctctgg
gtggagttcgcaaaattttatgaaaaacacgaacagctgaaagaggcgcgtatcgtgttc
gagaaagcattgaaagtgaagtatcgacacgtggacgacctggctagcgtttggtgtgaa
tacgccgagatggaaataagaaacgataattacgaccaagcattgaaagttttacgacga
ggtacgtctgttccccgtaagaagattggtactagttattacgaccagaaggagcccgtt
caaagccgtgtgcataagtcaatcaaagtatggtcgatgtatgctgatctcgaagaaagt
ttaggtaccttccagtcaacgaaagctgtttacaatcgtatcatcgaccttcgcattgca
acacctcagattatcatcaatttttccgcttttcttgaagaacacaaatacttcgaggaa
tcatacaaggcatatgagcgaggcatcgcgctatttaaatggcctcacgcttacgatatt
tggaatacgtatttatcgaaattcataaagagatatggtggaagcaagttagaaagaacc
cgagacttatttgaacaatgtttagaaaagtgtccggaaaagttcgcaaaattcttttat
ctcatgtatgctaaacttgaagaggactatgggttatcgagacatgctatggctgtgtac
gaaagagctaccaaggctgtgcctaaatctgaacaatacgaaattttcaacatctatata
aaacgcgcttcggaaatgtttggtataacacacacacgggaaatttacgagaaagccatc
gaagcgttaccagaccagaatgccagagatatttgcatgaggtacgctgagttggaaacc
aaacttggcgagattgatcgagcacgagcagtgtatagctatggttcgcagatgtgtgat
ccgaggttaacagctaacttttggaaggcgtggcatgattttgaagtgaaacatgggaac
gaagatacattccgtgaaatgttaagaattaaacggagcgttcaagctcaatacaatacg
caggttaattttatgtctgcgcagctgttagcatctcaagccaacgcagaaacggctaca
aagaacgaaatggagaagctagaagaaaaagcggctgcccttgctgaagatgcggaaaaa
gacagaccagcacccccgcagacgcagcctccttctaagagtgtgcttttcgttcgaggt
gaaacacaagcagagagtcttgctgatgttgagagtacaaacaatcctgaagaaatcgag
ctggctgaagatagtgatgacgagagcagtgaagatgatggcgatgttcgactggaacaa
aaagaaataccagaggaggtatttggtggaataaaaaagtcggattga
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