Hydractinia symbiolongicarpus: 130657215
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Entry
130657215 CDS
T09218
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130657215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsy03021
]
130657215
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130657215
Transcription machinery [BR:
hsy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130657215
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130657215
U7-dependent histone pre-mRNA processing factors
130657215
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
INTS1_R4
CRM1_C
E2-Crich
Motif
Other DBs
NCBI-GeneID:
130657215
NCBI-ProteinID:
XP_057316172
LinkDB
All DBs
Position
9:6791944..6809662
Genome browser
AA seq
1127 aa
AA seq
DB search
MALKGGKQASGEAAQFFSGQDVESQNASLQATAEKVVDLLNQSQLTSSENKLSYLKQVQE
LIVNKDPTLLDNFLDEILIFQQDRSGDIRKFVVVFIEEACKKDPALLSKTVGCLSYMLSD
ENTTVSKRVMLACNSLYKLALQLICKVRTIKDDLREMWENMNELKRHICGMIESDNDGVR
THAIKFMEMLILVHSPRSQNEDRRRDADISLDIVPKNHPLVTYDDLVDEGVTTLEALLAL
CASSNISSVNLMAVLSSLASIGKQRPMFLSTVVKSFESLHANLPQTLSKSQVSSVRKNLK
LQLFSIIRLSSAEPYITQIGTLLTDLGATGPEIQKSLPKLGSQKPRTNDEDANVMSKKKI
KTEDKMDVSGQFSLSKAIELTTADIVPRLTKETVTNLVLVSMLFLPRNMPSHFQETFTPI
AAAGSSTQAEHLGRLMATQMTNAGVGVGVEMAKEVAATEKKEKKSGKVETSLTKQAGGEQ
TKTKSSSSKQPRSVRDIASDLKVGSKSSSSADSSSTRLRKIKQFRLQDAVQNLKSDGRKK
MLHLSYKRILRATKKASISGSSAEQHKIIVGLAMQFYEELTADLIEFVMEDFRSRIDLCI
LWLFQEYVKAESKGDVKMLRYTQCLESIINGMKTCLEPRDKLFTRFILEAPYLSDGVRKI
IKEYCMDPERIMVGFSTLRELISKTPARCQEWLQLLLELTTAEKEQVRVQAIHSAKKLHS
RPDFADSIEDFALHSLQRLLLDTPPIKETFSDENQVEVETSEWSEESIKSYLYLYLALLP
TNHALFLNLAEVYVDASAIIKRTVLRHLEHPVRAIGMNSPELLRLVEHCPTGAETLVTRV
LHIVTDKSPPTQELVQKVKELYHKRVSDVRFLIPVLNGLAKNEIIDVLPKLISQTPNVVK
EVFNRLLGSTQTNAAAANPPLSPSELLVALHSVESKSDVKAVMKAINICFGEKNIYTQEV
LAVVIQQLMDISPLPTLFMRTVIQSLGMCPRLVGFVMNILSKLINKQVWKYPKVWQGFVK
CCQMTKPQSFPVLLQLPPKQLESVFEIAPDVKEQLENHVGNLTSNQRSHIPKTVLQLLEK
EEKPSSSTNADDLSATYSSSESRKRKADVKESPRAASKRKLTESDKS
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgaaaggtggtaagcaggcttctggggaagcagcccagttttttagtgggcaa
gacgttgagtctcaaaatgcttcattgcaagcaacagcagaaaaggttgttgatcttctt
aatcagtcacaactaacatcatcagaaaacaaacttagttatttaaaacaggttcaagaa
ttgattgtcaacaaagatcctacattgttagacaatttcttagatgaaatattaattttt
caacaagatcgttctggtgacatacgaaaatttgttgttgtttttattgaagaagcatgc
aagaaagatccagcactgttatcaaaaactgttggttgtttatcatacatgcttagtgat
gaaaatactactgtatcaaaaagagtaatgttggcttgtaattccttatataaacttgca
ttacagcttatttgcaaagtacgaactattaaagatgaccttcgagaaatgtgggagaac
atgaatgaacttaaaagacatatatgtggcatgattgagtcagataatgatggtgttcgt
acccatgccattaaatttatggagatgttaatacttgttcattctcctcgatcacaaaac
gaagaccgcagaagagatgcagatatctcactggacatagttcctaaaaatcatccatta
gtgacgtacgatgatttggtagacgaaggtgttactactttagaagctctacttgctttg
tgtgcttcatccaatatttctagtgttaacctaatggctgtgttgagctctcttgcaagt
attggtaaacaaagaccaatgtttctttcaactgttgtcaaatcatttgaatcattacat
gcgaatcttccacagactttatcaaaatcgcaagtcagcagtgtccgaaaaaacctcaaa
ttgcagctattttcaattattaggctttcctctgctgaaccctacatcacacagattggt
acgcttctaactgatcttggtgctacaggccctgagattcagaaaagcttaccaaaactt
ggctcacaaaaaccaaggaccaatgatgaagacgcaaatgttatgtcaaaaaagaaaatt
aaaacggaagacaaaatggatgtttccggccaattcagtctttctaaagcaatagaactg
actacagctgacatcgtgccgagattaacaaaagaaacagtgactaacttagtccttgtt
agtatgttgtttctaccacgaaatatgccatctcatttccaagaaacgttcacacccatc
gctgcagctggaagcagcacacaagcagaacatctaggtaggttgatggcaacacagatg
acaaacgctggtgtgggagttggtgttgaaatggccaaagaggtagctgcaacagagaag
aaagaaaaaaaatctggcaaggttgaaacatcccttacgaaacaagcaggtggcgaacaa
acgaaaactaaaagcagttcttcaaaacaacctcgatcagtacgtgatatcgcatcggat
ttaaaagtaggttcaaaatcgtcctcctccgcagattcgagttcaactcgattgcggaag
ataaaacaattcagattacaagacgcagtacaaaatctcaaatcagatggacgaaaaaaa
atgttacatttaagttataaaagaattttacgagcgacaaagaaagcgtccataagtgga
tctagtgcggaacaacataaaattattgttggattggcaatgcagttttacgaagaacta
actgcagatttgatagaatttgtgatggaagattttcgatcaagaatagatttatgtatc
ttgtggttgtttcaagagtacgtaaaagcagaatcaaaaggagatgtaaaaatgcttcgt
tacacgcaatgtttagaaagtatcataaatgggatgaaaacttgtttagaaccacgtgac
aagttgttcactagatttatcttagaagctccatacttgtcagatggtgttcggaaaata
ataaaagaatattgtatggatccggagaggattatggttggtttttcaacattacgtgaa
ttgatcagtaaaacaccagctcgttgtcaagaatggttacaattgttgttggagttgacc
actgctgagaaagaacaggtgcgtgtgcaagcaatccattcagcaaaaaaattgcacagc
agacctgattttgcagacagtatagaggatttcgcgcttcatagtttacagcgattatta
ctagatacgcctcctataaaggaaacgttctcagacgaaaatcaagttgaagtggaaaca
tctgaatggtcagaagaatccatcaaatcgtatctttacttatacctagctcttcttcca
acgaatcacgcgctgtttttgaatcttgcagaggtatatgttgacgcatcagctatcatc
aaaagaacagtccttcgtcatttagaacaccctgttcgagcaattggtatgaattctccg
gagttgttacgacttgttgaacactgtccaactggtgctgaaactttagttactcgtgtc
ttgcacattgtaacagataaaagtcctccgactcaagaacttgtacaaaaggtgaaagaa
ttgtatcataaacgtgtgtctgatgttagatttttaatccctgttttaaatggtctggct
aagaatgagattatagatgtgttacccaaactcatctcgcaaacaccaaatgtagtgaag
gaggtttttaatcgattacttggttcgactcaaacaaacgcagctgctgcgaatcctcca
ctgtcaccttctgagttgcttgttgctttacattctgtggaatcgaaaagtgatgtgaaa
gccgtcatgaaagctattaacatatgttttggcgaaaaaaacatctacacacaagaagtt
ttagctgttgttatccaacaactgatggatatttcaccgctacctaccttatttatgcga
actgttatacaatcactcggaatgtgtcctcgcttagttggtttcgttatgaacatttta
tcaaagttaatcaacaaacaggtttggaaatacccgaaagtttggcaaggttttgtaaaa
tgttgtcagatgacaaagcctcaatcatttccagtattgcttcaacttccaccaaaacaa
ttggaaagcgtttttgaaattgctccagatgtaaaagaacaacttgaaaatcacgttgga
aatttgacatctaatcaacgatcacacataccgaaaacagtgttgcaacttcttgaaaaa
gaagagaaaccttcgtcatcaacgaatgccgacgacttatcagcgacatattcgagcagc
gaaagtagaaaacgaaaagctgatgtaaaggaatctccccgggcggcctcaaaaagaaaa
ctcacggagagtgacaaatcgtaa
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