Hydractinia symbiolongicarpus: 130657644
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Entry
130657644 CDS
T09218
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130657644
09123 Folding, sorting and degradation
03018 RNA degradation
130657644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130657644
03041 Spliceosome [BR:
hsy03041
]
130657644
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130657644
mRNA degradation factors
5'-3' decay
Lsm complex
130657644
Spliceosome [BR:
hsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130657644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
130657644
NCBI-ProteinID:
XP_057316631
LinkDB
All DBs
Position
9:2642682..2734760
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AA seq
101 aa
AA seq
DB search
MSDDRKAKKTSILDLSKFVDKAIRVKFSGGREVAGVLKGYDHLLNIVLDNCTEFIRDPED
PYKLSDETRTLGIVVCRGTAVVLICPVDGMEAIANPFLQQE
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatagaaaagcaaagaaaacatccatcctggatctatcaaaatttgttgat
aaagcaatcagagtgaaatttagtggtggaagagaagttgctggcgtgttgaaaggatat
gaccatctgttgaatatagtgttagataattgtactgaatttattcgagatcctgaggac
ccgtacaaactctctgatgaaacacgaacgttaggcattgtggtttgtcgaggtactgct
gtggttctaatatgtcctgttgatggaatggaagcgattgctaaccctttcttacaacag
gaatag
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