Hydractinia symbiolongicarpus: 130662545
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Entry
130662545 CDS
T09218
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130662545
09123 Folding, sorting and degradation
03018 RNA degradation
130662545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130662545
03041 Spliceosome [BR:
hsy03041
]
130662545
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130662545
mRNA degradation factors
5'-3' decay
Lsm complex
130662545
Spliceosome [BR:
hsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130662545
Complex C
U2 snRNP components
130662545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
130662545
NCBI-ProteinID:
XP_057317421
LinkDB
All DBs
Position
10:complement(1202151..1202699)
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AA seq
103 aa
AA seq
DB search
MLFYSFFKSLVGKEVIVELKNDLSISGVLDSVDQYLNIKLTDISVTDPERYPHMLSVKNC
FLRGSVVRYVQLPPEDIDVSLLQDAARKEAEQQRKQKDTKEKE
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atgcttttttattcgttttttaaatcacttgttggtaaagaagtcattgtagagctaaag
aatgaccttagtatttctggagttctagattctgttgatcaatacttaaatataaaactg
acagatataagtgtaacagatcctgaaagatatccgcatatgttatctgtaaagaactgc
tttctgagaggttctgtggttagatatgttcagttgccgccagaagacatagatgtatca
ctactacaagatgctgctcgaaaagaagctgaacaacagaggaaacagaaagatactaaa
gaaaaagaataa
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